HHsearch alignment for GI: 254780217 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=100.00 E-value=3.1e-34 Score=295.28 Aligned_cols=201 Identities=36% Similarity=0.488 Sum_probs=174.9
Q ss_pred HHHCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCC
Q ss_conf 561092999999999998-2889816631179898889999999999817799886431210126788679999678987
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYC-SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH 90 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~-~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hp 90 (347)
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~ 74 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC------RSCKLIPAGNHP 74 (325)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHH------HHHHHHCCCCCC
T ss_conf 96433235899999999865888761003799999789999999999658664334552002------244432025688
Q ss_pred CEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 54530010001013421232378875544310222111121035322055424000145677766303434167650443
Q gi|254780217|r 91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHAS 170 (347)
Q Consensus 91 d~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~ 170 (347)
T Consensus 75 d~lel~~s~~~~-----~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 75 DFLELNPSDLRK-----IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CEEEECCCCCCC-----CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCH
T ss_conf 659977321333-----300699999999860446566772699973203269888876754332488871699974985
Q ss_pred CCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 357302520369886479998999999997278889678999999759897899988145
Q gi|254780217|r 171 PTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 171 ~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
T Consensus 150 ~~il~tI~SRc~~i~f~~~~~~~~i~~~e-------~~~l~~i~~~~~gd~r~~i~~lq~ 202 (325)
T COG0470 150 SKILPTIRSRCQRIRFKPPSRLEAIAWLE-------DQGLEEIAAVAEGDARKAINPLQA 202 (325)
T ss_pred HHCHHHHHHHEEEEECCCCCHHHHHHHHH-------HHHHHHHHHHHCCHHHHHCCHHHH
T ss_conf 55647877560788767741889999850-------757999998704068873489999