HHsearch alignment for GI: 254780217 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=98.93 E-value=5.3e-08 Score=84.11 Aligned_cols=136 Identities=18% Similarity=0.299 Sum_probs=63.7
Q ss_pred HHHCCHHHHHHHHHHHHHCCCC--------CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCHHHH
Q ss_conf 5610929999999999982889--------8166311798988899999999998177998-864312101267886799
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGRM--------HHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~l--------~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~~~~ 82 (347)
T Consensus 491 ~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~--EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM--EKHSVSR 568 (786)
T ss_pred CCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHH--HHHHHHH
T ss_conf 65017399999999999998569999998735788667886569999999999965997444554568777--7877998
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-----
Q ss_conf 996789875453001000101342123237887554431022211112103532205542400014567776630-----
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP----- 157 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP----- 157 (347)
T Consensus 569 LI--GaPPGYVGy----ee-GG------------~LTEaVRr~P----ySViLlDEIEKAHpdV~nilLQVlDdGrLTD~ 625 (786)
T COG0542 569 LI--GAPPGYVGY----EE-GG------------QLTEAVRRKP----YSVILLDEIEKAHPDVFNLLLQVLDDGRLTDG 625 (786)
T ss_pred HH--CCCCCCCEE----CC-CC------------CHHHHHHCCC----CEEEEECHHHHCCHHHHHHHHHHHCCCCEECC
T ss_conf 72--799987200----65-54------------0037660699----86888412644088999999998467805548
Q ss_pred ------CCCCCEEEEECCCCC
Q ss_conf ------343416765044335
Q gi|254780217|r 158 ------PQKVLFILISHASPT 172 (347)
Q Consensus 158 ------p~~t~fiLit~~~~~ 172 (347)
T Consensus 626 ~Gr~VdFrNtiIImTSN~Gs~ 646 (786)
T COG0542 626 QGRTVDFRNTIIIMTSNAGSE 646 (786)
T ss_pred CCCEEECCEEEEEEECCCCHH
T ss_conf 998884300289984502659