HHsearch alignment for GI: 254780217 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=98.93  E-value=5.3e-08  Score=84.11  Aligned_cols=136  Identities=18%  Similarity=0.299  Sum_probs=63.7

Q ss_pred             HHHCCHHHHHHHHHHHHHCCCC--------CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCHHHH
Q ss_conf             5610929999999999982889--------8166311798988899999999998177998-864312101267886799
Q gi|254780217|r   12 QRLFGHEDIEKFLSQYYCSGRM--------HHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSPFVK   82 (347)
Q Consensus        12 ~~i~G~~~~~~~L~~~~~~~~l--------~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~~~~   82 (347)
T Consensus       491 ~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~--EkHsVSr  568 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM--EKHSVSR  568 (786)
T ss_pred             CCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHH--HHHHHHH
T ss_conf             65017399999999999998569999998735788667886569999999999965997444554568777--7877998


Q ss_pred             HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC-----
Q ss_conf             996789875453001000101342123237887554431022211112103532205542400014567776630-----
Q gi|254780217|r   83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP-----  157 (347)
Q Consensus        83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP-----  157 (347)
T Consensus       569 LI--GaPPGYVGy----ee-GG------------~LTEaVRr~P----ySViLlDEIEKAHpdV~nilLQVlDdGrLTD~  625 (786)
T COG0542         569 LI--GAPPGYVGY----EE-GG------------QLTEAVRRKP----YSVILLDEIEKAHPDVFNLLLQVLDDGRLTDG  625 (786)
T ss_pred             HH--CCCCCCCEE----CC-CC------------CHHHHHHCCC----CEEEEECHHHHCCHHHHHHHHHHHCCCCEECC
T ss_conf             72--799987200----65-54------------0037660699----86888412644088999999998467805548


Q ss_pred             ------CCCCCEEEEECCCCC
Q ss_conf             ------343416765044335
Q gi|254780217|r  158 ------PQKVLFILISHASPT  172 (347)
Q Consensus       158 ------p~~t~fiLit~~~~~  172 (347)
T Consensus       626 ~Gr~VdFrNtiIImTSN~Gs~  646 (786)
T COG0542         626 QGRTVDFRNTIIIMTSNAGSE  646 (786)
T ss_pred             CCCEEECCEEEEEEECCCCHH
T ss_conf             998884300289984502659