HHsearch alignment for GI: 254780217 and conserved domain: COG1061

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=92.53  E-value=0.21  Score=31.02  Aligned_cols=137  Identities=15%  Similarity=0.100  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHH-----CCCCC-
Q ss_conf             299999999999828898166311798988899999999998177998864312101267886799996-----78987-
Q gi|254780217|r   17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMA-----SHALH-   90 (347)
Q Consensus        17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~hp-   90 (347)
T Consensus        41 Q~~al~a~~~~~~~---~~~gvivlpTGaGKT~va~~~~~~~~~~-------~--Lvlv~~~~L~~Qw~~~~~~~~~~~~  108 (442)
T COG1061          41 QEEALDALVKNRRT---ERRGVIVLPTGAGKTVVAAEAIAELKRS-------T--LVLVPTKELLDQWAEALKKFLLLND  108 (442)
T ss_pred             HHHHHHHHHHHCCC---CCCEEEEECCCCCHHHHHHHHHHHHCCC-------E--EEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999962225---7867999679998899999999982698-------8--9997829999999999997348867


Q ss_pred             CEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             545300100010134212323788755443102221111-2103532205542400014567776630343416765044
Q gi|254780217|r   91 DFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTG-YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHA  169 (347)
Q Consensus        91 d~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~-~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~  169 (347)
T Consensus       109 ~~g~~~~--~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~--~LGLTATp  183 (442)
T COG1061         109 EIGIYGG--GEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP--RLGLTATP  183 (442)
T ss_pred             CCCEECC--CCCCCCC-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE--EEEEECCC
T ss_conf             6603368--7233577-74899983897641555540356667599975245784779999997510310--46771487


Q ss_pred             C
Q ss_conf             3
Q gi|254780217|r  170 S  170 (347)
Q Consensus       170 ~  170 (347)
T Consensus       184 ~  184 (442)
T COG1061         184 E  184 (442)
T ss_pred             C
T ss_conf             2