HHsearch alignment for GI: 254780217 and conserved domain: COG1203

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=93.67  E-value=0.32  Score=29.46  Aligned_cols=159  Identities=13%  Similarity=0.061  Sum_probs=81.4

Q ss_pred             CCCCE-EEEECCCCCCCHHHHHHHHHHHHHCCC-C-CCC----CCHHHCCCCCCCHHHHHHHC-----C-CCCCEE----
Q ss_conf             88981-663117989888999999999981779-9-886----43121012678867999967-----8-987545----
Q gi|254780217|r   31 GRMHH-ALLFEGEQGIGKATLGFRYAGHVLQNP-D-FSK----APVRMCNPDPCSPFVKQMAS-----H-ALHDFL----   93 (347)
Q Consensus        31 ~~l~h-a~Lf~Gp~GiGK~~~A~~~A~~llc~~-~-~~~----~~~~~~~~~~~~~~~~~i~~-----~-~hpd~~----   93 (347)
T Consensus       210 ~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~  289 (733)
T COG1203         210 LEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLL  289 (733)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             22557518999168887199999999997531135456289965589999999999987512355433100131025565


Q ss_pred             --------EECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHCCHH-HHHHHHHHHHHCC--
Q ss_conf             --------30010001013421232378875544310222111----12103532205542400-0145677766303--
Q gi|254780217|r   94 --------YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT----GYWRVIMIDPVDGMNRN-AANALLKSLEEPP--  158 (347)
Q Consensus        94 --------~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~----~~~Ki~IId~ad~ln~~-AaNALLK~LEEPp--  158 (347)
T Consensus       290 ~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~  369 (733)
T COG1203         290 LEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEA  369 (733)
T ss_pred             HCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             17010022588812422362045222069998557404667257788764677874275416543089999999999968


Q ss_pred             CCCCEEEEECCCCCCCHHHHCEEEEEECCCC
Q ss_conf             4341676504433573025203698864799
Q gi|254780217|r  159 QKVLFILISHASPTILSTIRSRCLSIKFNSL  189 (347)
Q Consensus       159 ~~t~fiLit~~~~~il~TI~SRc~~i~f~~l  189 (347)
T Consensus       370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~  400 (733)
T COG1203         370 GVPVLLMSATLPPFLKEKLKKALGKGREVVE  400 (733)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCEECC
T ss_conf             9978999278997999999998503761213