HHsearch alignment for GI: 254780217 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=93.67 E-value=0.32 Score=29.46 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=81.4
Q ss_pred CCCCE-EEEECCCCCCCHHHHHHHHHHHHHCCC-C-CCC----CCHHHCCCCCCCHHHHHHHC-----C-CCCCEE----
Q ss_conf 88981-663117989888999999999981779-9-886----43121012678867999967-----8-987545----
Q gi|254780217|r 31 GRMHH-ALLFEGEQGIGKATLGFRYAGHVLQNP-D-FSK----APVRMCNPDPCSPFVKQMAS-----H-ALHDFL---- 93 (347)
Q Consensus 31 ~~l~h-a~Lf~Gp~GiGK~~~A~~~A~~llc~~-~-~~~----~~~~~~~~~~~~~~~~~i~~-----~-~hpd~~---- 93 (347)
T Consensus 210 ~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~ 289 (733)
T COG1203 210 LEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLL 289 (733)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 22557518999168887199999999997531135456289965589999999999987512355433100131025565
Q ss_pred --------EECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHCCHH-HHHHHHHHHHHCC--
Q ss_conf --------30010001013421232378875544310222111----12103532205542400-0145677766303--
Q gi|254780217|r 94 --------YLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANT----GYWRVIMIDPVDGMNRN-AANALLKSLEEPP-- 158 (347)
Q Consensus 94 --------~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~----~~~Ki~IId~ad~ln~~-AaNALLK~LEEPp-- 158 (347)
T Consensus 290 ~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~ 369 (733)
T COG1203 290 LEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEA 369 (733)
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 17010022588812422362045222069998557404667257788764677874275416543089999999999968
Q ss_pred CCCCEEEEECCCCCCCHHHHCEEEEEECCCC
Q ss_conf 4341676504433573025203698864799
Q gi|254780217|r 159 QKVLFILISHASPTILSTIRSRCLSIKFNSL 189 (347)
Q Consensus 159 ~~t~fiLit~~~~~il~TI~SRc~~i~f~~l 189 (347)
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~ 400 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVE 400 (733)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEECC
T ss_conf 9978999278997999999998503761213