HHsearch alignment for GI: 254780217 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=97.64 E-value=2.6e-05 Score=62.46 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=35.0
Q ss_pred HHHCCHHHHHHHHHHHH----H----CCC-----C-CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 56109299999999999----8----288-----9-816631179898889999999999817
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYY----C----SGR-----M-HHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~----~----~~~-----l-~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV 123 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV 123 (408)
T ss_pred HHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 243262543103466410688998604887763532031799888997577999999998489