HHsearch alignment for GI: 254780217 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=97.87 E-value=7.7e-05 Score=58.64 Aligned_cols=198 Identities=17% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHH
Q ss_conf 5587565610929999999999982---8898166311798988899999999998177998864312101267886799
Q gi|254780217|r 6 FDPVYNQRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVK 82 (347)
Q Consensus 6 ~~p~~~~~i~G~~~~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~ 82 (347)
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~--vLi~GetGtGKel~A~~iH-~-~s~r~-~~~PFI~~-------NCa 139 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPSGLP--VLIIGETGTGKELFARLIH-A-LSARR-AEAPFIAF-------NCA 139 (403)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--EEEECCCCCCHHHHHHHHH-H-HHHCC-CCCCEEEE-------EHH
T ss_conf 02215666635688899999999861899984--7986688753889999999-8-61213-58987997-------777
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH------
Q ss_conf 99678987545300100010134212323788755443102221111210353220554240001456777663------
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE------ 156 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE------ 156 (347)
T Consensus 140 ~~~e-n~~~~eLFG~~kGaftGa~~~k~G----------lfe~-A~--GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 140 AYSE-NLQEAELFGHEKGAFTGAQGGKAG----------LFEQ-AN--GGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRV 205 (403)
T ss_pred HHCC-CHHHHHHHCCCCCEEECCCCCCCC----------HHEE-CC--CCEEEHHHHHHCCHHHHHHHHHHHHCCCEEEC
T ss_conf 7376-777777732000000256678676----------4205-27--97776563653798589999999871865766
Q ss_pred -----CCCCCCEEEEECCC--CCCCH--HHHCEEEE--EECCCCCHH--HHH----HHHHHH----C---CCCC-HHHHH
Q ss_conf -----03434167650443--35730--25203698--864799989--999----999972----7---8889-67899
Q gi|254780217|r 157 -----PPQKVLFILISHAS--PTILS--TIRSRCLS--IKFNSLSEN--NLY----KALEQL----K---IMGW-DSKRD 211 (347)
Q Consensus 157 -----Pp~~t~fiLit~~~--~~il~--TI~SRc~~--i~f~~l~~~--~~~----~~L~~~----~---~~~~-~~~~~ 211 (347)
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCCCCCCCCEEEECCCCCHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 88888677740451356687999874052556416754318972435555999999999999997399988888999999
Q ss_pred HHHHHCCCCHHHHHHHHC
Q ss_conf 999975989789998814
Q gi|254780217|r 212 FVKIAAYGSVARAIKILH 229 (347)
Q Consensus 212 ~~~~~s~Gs~~~A~~ll~ 229 (347)
T Consensus 286 L~~y~~pGNirELkN~Ve 303 (403)
T COG1221 286 LLAYDWPGNIRELKNLVE 303 (403)
T ss_pred HHHCCCCCCHHHHHHHHH
T ss_conf 984889983999999999