HHsearch alignment for GI: 254780217 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.30 E-value=1.8e-05 Score=63.69 Aligned_cols=183 Identities=16% Similarity=0.140 Sum_probs=113.7
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 75656109299999999999828------------898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg------S-- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG------S-- 219 (406)
T ss_pred CCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECC------H--
T ss_conf 78653358899999999984033668889997499999712766899975889999987205866999421------9--
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------HH
Q ss_conf 8867999967898754530010001013421232378875544310222111121035322055424-----------00
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-----------RN 145 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-----------~~ 145 (347)
T Consensus 220 ---ElVqKYiGEGa----------------------RlVRelF~lAr----ekaPsIIFiDEIDAIg~kR~d~~t~gDrE 270 (406)
T COG1222 220 ---ELVQKYIGEGA----------------------RLVRELFELAR----EKAPSIIFIDEIDAIGAKRFDSGTSGDRE 270 (406)
T ss_pred ---HHHHHHHCCCH----------------------HHHHHHHHHHH----HCCCEEEEEECHHHHHCCCCCCCCCCHHH
T ss_conf ---99999834116----------------------99999999874----14984999831122311113688885099
Q ss_pred HHHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHH--CCC-CCHHHHHHHH
Q ss_conf 0145677766-----303434167650443357302520--36-98864799989999999972--788-8967899999
Q gi|254780217|r 146 AANALLKSLE-----EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQL--KIM-GWDSKRDFVK 214 (347)
Q Consensus 146 AaNALLK~LE-----EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~--~~~-~~~~~~~~~~ 214 (347)
T Consensus 271 VQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la 350 (406)
T COG1222 271 VQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA 350 (406)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 99999999986058897887689985588555576650887545301168989789999999876214676676999998
Q ss_pred HHCCCCHHHHHHHH
Q ss_conf 97598978999881
Q gi|254780217|r 215 IAAYGSVARAIKIL 228 (347)
Q Consensus 215 ~~s~Gs~~~A~~ll 228 (347)
T Consensus 351 ~~~~g~sGAdlkai 364 (406)
T COG1222 351 RLTEGFSGADLKAI 364 (406)
T ss_pred HHCCCCCHHHHHHH
T ss_conf 75389956779999