HHsearch alignment for GI: 254780217 and conserved domain: COG1223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=98.98 E-value=5.2e-09 Score=92.17 Aligned_cols=181 Identities=19% Similarity=0.268 Sum_probs=118.7
Q ss_pred CCCCHHHHCCHHHHHHH---HHHHHHC----C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 58756561092999999---9999982----8-89816631179898889999999999817799886431210126788
Q gi|254780217|r 7 DPVYNQRLFGHEDIEKF---LSQYYCS----G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 7 ~p~~~~~i~G~~~~~~~---L~~~~~~----~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-------kvp~l~vk----- 183 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-------KVPLLLVK----- 183 (368)
T ss_pred CCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC-------CCCEEEEC-----
T ss_conf 366176641639888887999999649687634575416877899964879999872545-------78548711-----
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC------------HHH
Q ss_conf 67999967898754530010001013421232378875544310222111121035322055424------------000
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN------------RNA 146 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln------------~~A 146 (347)
T Consensus 184 -at~li--GehVG------------------dgar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDVsEi 238 (368)
T COG1223 184 -ATELI--GEHVG------------------DGARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDVSEI 238 (368)
T ss_pred -HHHHH--HHHHH------------------HHHHHHHHHHHHHHHC----CCEEEEEHHHHHHHHHHHHHHHCCCHHHH
T ss_conf -68888--87743------------------5989999999988751----98499840024555304578864549999
Q ss_pred HHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHHHC---CCCCHHHHHHHHHHCCCC
Q ss_conf 14567776630--343416765044335730252036-988647999899999999727---888967899999975989
Q gi|254780217|r 147 ANALLKSLEEP--PQKVLFILISHASPTILSTIRSRC-LSIKFNSLSENNLYKALEQLK---IMGWDSKRDFVKIAAYGS 220 (347)
Q Consensus 147 aNALLK~LEEP--p~~t~fiLit~~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~~~---~~~~~~~~~~~~~~s~Gs 220 (347)
T Consensus 239 VNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 239 VNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM 318 (368)
T ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf 99999850174457756999505984650788886556506564888589999999989858976556899999984787
Q ss_pred HHHH
Q ss_conf 7899
Q gi|254780217|r 221 VARA 224 (347)
Q Consensus 221 ~~~A 224 (347)
T Consensus 319 SgRd 322 (368)
T COG1223 319 SGRD 322 (368)
T ss_pred CCHH
T ss_conf 7206