HHsearch alignment for GI: 254780217 and conserved domain: COG1223

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=98.98  E-value=5.2e-09  Score=92.17  Aligned_cols=181  Identities=19%  Similarity=0.268  Sum_probs=118.7

Q ss_pred             CCCCHHHHCCHHHHHHH---HHHHHHC----C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf             58756561092999999---9999982----8-89816631179898889999999999817799886431210126788
Q gi|254780217|r    7 DPVYNQRLFGHEDIEKF---LSQYYCS----G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS   78 (347)
Q Consensus         7 ~p~~~~~i~G~~~~~~~---L~~~~~~----~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~   78 (347)
T Consensus       116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-------kvp~l~vk-----  183 (368)
T COG1223         116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-------KVPLLLVK-----  183 (368)
T ss_pred             CCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC-------CCCEEEEC-----
T ss_conf             366176641639888887999999649687634575416877899964879999872545-------78548711-----


Q ss_pred             HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC------------HHH
Q ss_conf             67999967898754530010001013421232378875544310222111121035322055424------------000
Q gi|254780217|r   79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN------------RNA  146 (347)
Q Consensus        79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln------------~~A  146 (347)
T Consensus       184 -at~li--GehVG------------------dgar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDVsEi  238 (368)
T COG1223         184 -ATELI--GEHVG------------------DGARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDVSEI  238 (368)
T ss_pred             -HHHHH--HHHHH------------------HHHHHHHHHHHHHHHC----CCEEEEEHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             -68888--87743------------------5989999999988751----98499840024555304578864549999


Q ss_pred             HHHHHHHHHHC--CCCCCEEEEECCCCCCCHHHHCEE-EEEECCCCCHHHHHHHHHHHC---CCCCHHHHHHHHHHCCCC
Q ss_conf             14567776630--343416765044335730252036-988647999899999999727---888967899999975989
Q gi|254780217|r  147 ANALLKSLEEP--PQKVLFILISHASPTILSTIRSRC-LSIKFNSLSENNLYKALEQLK---IMGWDSKRDFVKIAAYGS  220 (347)
Q Consensus       147 aNALLK~LEEP--p~~t~fiLit~~~~~il~TI~SRc-~~i~f~~l~~~~~~~~L~~~~---~~~~~~~~~~~~~~s~Gs  220 (347)
T Consensus       239 VNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~  318 (368)
T COG1223         239 VNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM  318 (368)
T ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf             99999850174457756999505984650788886556506564888589999999989858976556899999984787


Q ss_pred             HHHH
Q ss_conf             7899
Q gi|254780217|r  221 VARA  224 (347)
Q Consensus       221 ~~~A  224 (347)
T Consensus       319 SgRd  322 (368)
T COG1223         319 SGRD  322 (368)
T ss_pred             CCHH
T ss_conf             7206