HHsearch alignment for GI: 254780217 and conserved domain: COG1474
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones].
Probab=98.66 E-value=7.8e-07 Score=74.68 Aligned_cols=208 Identities=19% Similarity=0.168 Sum_probs=125.2
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC-C
Q ss_conf 6555587565610929999999999982---88981663117989888999999999981779988643121012678-8
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC-S 78 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~-~ 78 (347)
T Consensus 11 ~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 11 LEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred CCCCCCHH---CCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHH
T ss_conf 75558220---103488999999999998558998607998899987328999999999733156757999513078787
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH--
Q ss_conf 67999967898754530010001013421232378875-544310222111121035322055424000145677766--
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIR-RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE-- 155 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR-~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE-- 155 (347)
T Consensus 88 ~i~~~i~~~--------------~~~~p~~g~~~~~~~~~l~~~~~~---~~~~~IvvLDEid~L~~~~~~~LY~L~r~~ 150 (366)
T COG1474 88 QVLSKILNK--------------LGKVPLTGDSSLEILKRLYDNLSK---KGKTVIVILDEVDALVDKDGEVLYSLLRAP 150 (366)
T ss_pred HHHHHHHHH--------------HCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEEECCHHHHHCCCCCHHHHEECCC
T ss_conf 999999998--------------268997676326899999997774---187599997647654154641455111247
Q ss_pred -HCCCCCCEEEEECCC---CCCCHHHHCEEEE--EECCCCCHHHHHHHHHHH------CCCCCHHHHHHHH---HHCCCC
Q ss_conf -303434167650443---3573025203698--864799989999999972------7888967899999---975989
Q gi|254780217|r 156 -EPPQKVLFILISHAS---PTILSTIRSRCLS--IKFNSLSENNLYKALEQL------KIMGWDSKRDFVK---IAAYGS 220 (347)
Q Consensus 156 -EPp~~t~fiLit~~~---~~il~TI~SRc~~--i~f~~l~~~~~~~~L~~~------~~~~~~~~~~~~~---~~s~Gs 220 (347)
T Consensus 151 ~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GD 230 (366)
T COG1474 151 GENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGD 230 (366)
T ss_pred CCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 76753799999735488999875667650687635528989899999999999854046874803999999988761864
Q ss_pred HHHHHHHHCC
Q ss_conf 7899988145
Q gi|254780217|r 221 VARAIKILHY 230 (347)
Q Consensus 221 ~~~A~~ll~~ 230 (347)
T Consensus 231 AR~aidilr~ 240 (366)
T COG1474 231 ARKAIDILRR 240 (366)
T ss_pred HHHHHHHHHH
T ss_conf 7760899999