HHsearch alignment for GI: 254780217 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=97.10 E-value=0.003 Score=45.80 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECC
Q ss_conf 99999999999828898166311798988899999999998177998864312101267886799996789875453001
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY 97 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~ 97 (347)
T Consensus 89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~------------------------g--~sv~f~~~ 141 (254)
T COG1484 89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA------------------------G--ISVLFITA 141 (254)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH-HC------------------------C--CEEEEEEH
T ss_conf 999999999998732588289989999879999999999999-83------------------------9--84999885
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHCCCCC-------CCCCCHHHHHHHHHHCC--HHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 00010134212323788755443102221-------11121035322055424--0001456777663034341676504
Q gi|254780217|r 98 SLNPKTGKWRTVITVDEIRRIRYFLSLTA-------NTGYWRVIMIDPVDGMN--RNAANALLKSLEEPPQKVLFILISH 168 (347)
Q Consensus 98 ~~~~k~~~~~~~I~vd~IR~l~~~~~~~~-------~~~~~Ki~IId~ad~ln--~~AaNALLK~LEEPp~~t~fiLit~ 168 (347)
T Consensus 142 --------------~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN 207 (254)
T COG1484 142 --------------PDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSN 207 (254)
T ss_pred --------------HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf --------------999999999874552689999887528989982367766881558799999999997305420205
Q ss_pred C
Q ss_conf 4
Q gi|254780217|r 169 A 169 (347)
Q Consensus 169 ~ 169 (347)
T Consensus 208 ~ 208 (254)
T COG1484 208 L 208 (254)
T ss_pred C
T ss_conf 8