HHsearch alignment for GI: 254780217 and conserved domain: COG1484

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=97.10  E-value=0.003  Score=45.80  Aligned_cols=111  Identities=14%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECC
Q ss_conf             99999999999828898166311798988899999999998177998864312101267886799996789875453001
Q gi|254780217|r   18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSY   97 (347)
Q Consensus        18 ~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~   97 (347)
T Consensus        89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~------------------------g--~sv~f~~~  141 (254)
T COG1484          89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA------------------------G--ISVLFITA  141 (254)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH-HC------------------------C--CEEEEEEH
T ss_conf             999999999998732588289989999879999999999999-83------------------------9--84999885


Q ss_pred             CCHHHCCCCCCCCCHHHHHHHHHHCCCCC-------CCCCCHHHHHHHHHHCC--HHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             00010134212323788755443102221-------11121035322055424--0001456777663034341676504
Q gi|254780217|r   98 SLNPKTGKWRTVITVDEIRRIRYFLSLTA-------NTGYWRVIMIDPVDGMN--RNAANALLKSLEEPPQKVLFILISH  168 (347)
Q Consensus        98 ~~~~k~~~~~~~I~vd~IR~l~~~~~~~~-------~~~~~Ki~IId~ad~ln--~~AaNALLK~LEEPp~~t~fiLit~  168 (347)
T Consensus       142 --------------~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN  207 (254)
T COG1484         142 --------------PDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSN  207 (254)
T ss_pred             --------------HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf             --------------999999999874552689999887528989982367766881558799999999997305420205


Q ss_pred             C
Q ss_conf             4
Q gi|254780217|r  169 A  169 (347)
Q Consensus       169 ~  169 (347)
T Consensus       208 ~  208 (254)
T COG1484         208 L  208 (254)
T ss_pred             C
T ss_conf             8