HHsearch alignment for GI: 254780217 and conserved domain: COG1643

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=95.93  E-value=0.046  Score=36.29  Aligned_cols=140  Identities=19%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC----HHHHHHHC--CCCCC-E
Q ss_conf             99999999982889816631179898889999999999817799886431210126788----67999967--89875-4
Q gi|254780217|r   20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS----PFVKQMAS--HALHD-F   92 (347)
Q Consensus        20 ~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~----~~~~~i~~--~~hpd-~   92 (347)
T Consensus        54 ~~~~i~~ai~~~---~vvii~getGsGKTTq---lP~~lle~g~~~~g-~I~~tQ-PRRlAArsvA~RvAeel~~~~G~~  125 (845)
T COG1643          54 VRDEILKAIEQN---QVVIIVGETGSGKTTQ---LPQFLLEEGLGIAG-KIGCTQ-PRRLAARSVAERVAEELGEKLGET  125 (845)
T ss_pred             HHHHHHHHHHHC---CEEEEECCCCCCHHHH---HHHHHHHHHCCCCC-EEEECC-CHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             899999999869---7899867998875878---89999960016687-599658-438999999999999838986765


Q ss_pred             EEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH--HHHHHHH-HHHCCCCCCEEEEEC
Q ss_conf             530010001013421232378875544310222111121035322055424000--1456777-663034341676504
Q gi|254780217|r   93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA--ANALLKS-LEEPPQKVLFILISH  168 (347)
Q Consensus        93 ~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A--aNALLK~-LEEPp~~t~fiLit~  168 (347)
T Consensus       126 VGY~iRfe~~~-s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSA  203 (845)
T COG1643         126 VGYSIRFESKV-SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA  203 (845)
T ss_pred             EEEEEEEECCC-CCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             43799962267-8771468951479999984380204587799701335568889999999999864688705999725