HHsearch alignment for GI: 254780217 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=95.93 E-value=0.046 Score=36.29 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=69.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC----HHHHHHHC--CCCCC-E
Q ss_conf 99999999982889816631179898889999999999817799886431210126788----67999967--89875-4
Q gi|254780217|r 20 IEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS----PFVKQMAS--HALHD-F 92 (347)
Q Consensus 20 ~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~----~~~~~i~~--~~hpd-~ 92 (347)
T Consensus 54 ~~~~i~~ai~~~---~vvii~getGsGKTTq---lP~~lle~g~~~~g-~I~~tQ-PRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 54 VRDEILKAIEQN---QVVIIVGETGSGKTTQ---LPQFLLEEGLGIAG-KIGCTQ-PRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHC---CEEEEECCCCCCHHHH---HHHHHHHHHCCCCC-EEEECC-CHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 899999999869---7899867998875878---89999960016687-599658-438999999999999838986765
Q ss_pred EEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH--HHHHHHH-HHHCCCCCCEEEEEC
Q ss_conf 530010001013421232378875544310222111121035322055424000--1456777-663034341676504
Q gi|254780217|r 93 LYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNA--ANALLKS-LEEPPQKVLFILISH 168 (347)
Q Consensus 93 ~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~A--aNALLK~-LEEPp~~t~fiLit~ 168 (347)
T Consensus 126 VGY~iRfe~~~-s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 126 VGYSIRFESKV-SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred EEEEEEEECCC-CCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 43799962267-8771468951479999984380204587799701335568889999999999864688705999725