HHsearch alignment for GI: 254780217 and conserved domain: COG2842
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only].
Probab=93.32 E-value=0.59 Score=27.36 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=67.6
Q ss_pred CCCHHHHCCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 8756561092999---9999999982889816631179898889999999999817799886431210126788679999
Q gi|254780217|r 8 PVYNQRLFGHEDI---EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQM 84 (347)
Q Consensus 8 p~~~~~i~G~~~~---~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i 84 (347)
T Consensus 68 ~~~~~~~l~tkt~r~~~~~~~~A~k~g~---l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~-----~~i~~i 139 (297)
T COG2842 68 EKLAPDFLETKTVRRIFFRTRPASKTGS---LVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTAL-----VLILII 139 (297)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCC---EEEEECCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHH-----HHHHHH
T ss_conf 5466432035024767542055551685---47886332200689998653358641361588136788-----999999
Q ss_pred HCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 67898754530010001013421232378875544310222111121035322055424000145677766303434167
Q gi|254780217|r 85 ASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFI 164 (347)
Q Consensus 85 ~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fi 164 (347)
T Consensus 140 ~--------------~~~~~-----~~~~~~~d~~~~~~~~-l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G--i~~v 197 (297)
T COG2842 140 C--------------AAAFG-----ATDGTINDLTERLMIR-LRDTVRLIIVDEADRLPYRALEELRRIHDKTG--IGVV 197 (297)
T ss_pred H--------------HHHHC-----CCCHHHHHHHHHHHHH-HCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHC--CEEE
T ss_conf 9--------------98740-----1421688889999999-71576526650321258689999999887508--1599
Q ss_pred EE
Q ss_conf 65
Q gi|254780217|r 165 LI 166 (347)
Q Consensus 165 Li 166 (347)
T Consensus 198 Lv 199 (297)
T COG2842 198 LV 199 (297)
T ss_pred EE
T ss_conf 83