HHsearch alignment for GI: 254780217 and conserved domain: KOG0728

Probab=97.32  E-value=0.00082  Score=50.35  Aligned_cols=156  Identities=16%  Similarity=0.178  Sum_probs=85.4

Q ss_pred             CCCHHHHCC-HHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC
Q ss_conf             875656109-299999999999828------------8981663117989888999999999981779988643121012
Q gi|254780217|r    8 PVYNQRLFG-HEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNP   74 (347)
Q Consensus         8 p~~~~~i~G-~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~   74 (347)
T Consensus       142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsg------s  215 (404)
T KOG0728         142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG------S  215 (404)
T ss_pred             CCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECH------H
T ss_conf             8308887503888999999998265668789985187887604884699975629999987541407999644------9


Q ss_pred             CCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-----------
Q ss_conf             678867999967898754530010001013421232378875544310222111121035322055424-----------
Q gi|254780217|r   75 DPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN-----------  143 (347)
Q Consensus        75 ~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln-----------  143 (347)
T Consensus       216 e---lvqk~igeg------------------------srmvrelf----vmarehapsiifmdeidsigs~r~e~~~ggd  264 (404)
T KOG0728         216 E---LVQKYIGEG------------------------SRMVRELF----VMAREHAPSIIFMDEIDSIGSSRVESGSGGD  264 (404)
T ss_pred             H---HHHHHHHHH------------------------HHHHHHHH----HHHHHCCCCEEEEHHCCCCCCCCCCCCCCCC
T ss_conf             9---999985013------------------------89999999----9987508826750000121234345789863


Q ss_pred             HHHHHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHCEE---EEEECCCCCHHHHHHHHHH
Q ss_conf             000145677766-----30343416765044335730252036---9886479998999999997
Q gi|254780217|r  144 RNAANALLKSLE-----EPPQKVLFILISHASPTILSTIRSRC---LSIKFNSLSENNLYKALEQ  200 (347)
Q Consensus       144 ~~AaNALLK~LE-----EPp~~t~fiLit~~~~~il~TI~SRc---~~i~f~~l~~~~~~~~L~~  200 (347)
T Consensus       265 sevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki  329 (404)
T KOG0728         265 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI  329 (404)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             89999999999740240003662699841642224686638775455564899877888789988