HHsearch alignment for GI: 254780217 and conserved domain: KOG2004

Probab=98.31  E-value=1.6e-05  Score=64.08  Aligned_cols=157  Identities=23%  Similarity=0.328  Sum_probs=97.0

Q ss_pred             HHHCCHHHHHHHHHHHHHCCCCC-----EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHC
Q ss_conf             56109299999999999828898-----1663117989888999999999981779988643121012678867999967
Q gi|254780217|r   12 QRLFGHEDIEKFLSQYYCSGRMH-----HALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMAS   86 (347)
Q Consensus        12 ~~i~G~~~~~~~L~~~~~~~~l~-----ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (347)
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf--RfSvGG~--------tDvAeI  480 (906)
T KOG2004         411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF--RFSVGGM--------TDVAEI  480 (906)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEE--EEECCCC--------CCHHHH
T ss_conf             653016889999999999875146678837998689987732189999998487469--9853663--------427764


Q ss_pred             CCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHHHCC----
Q ss_conf             8987545300100010134212323788755443102221111210353220554240----00145677766303----
Q gi|254780217|r   87 HALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLEEPP----  158 (347)
Q Consensus        87 ~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LEEPp----  158 (347)
T Consensus       481 kGHRRTYV-G--AMPG--------------kiIq~LK~v~t~N--PliLiDEvDKlG~g~qGDPasALLElLD-PEQNan  540 (906)
T KOG2004         481 KGHRRTYV-G--AMPG--------------KIIQCLKKVKTEN--PLILIDEVDKLGSGHQGDPASALLELLD-PEQNAN  540 (906)
T ss_pred             CCCCEEEE-C--CCCH--------------HHHHHHHHHCCCC--CEEEEEHHHHHCCCCCCCHHHHHHHHCC-HHHCCC
T ss_conf             25421100-1--4884--------------8999998617788--6588532234178877986899987439-653553


Q ss_pred             ------------CCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH
Q ss_conf             ------------4341676504433573025203698864799989999999
Q gi|254780217|r  159 ------------QKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL  198 (347)
Q Consensus       159 ------------~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L  198 (347)
T Consensus       541 FlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA  592 (906)
T KOG2004         541 FLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIA  592 (906)
T ss_pred             HHHHCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHEEECCCCCHHHHHHHH
T ss_conf             4542026642111068898536445698566412232203672279899999