HHsearch alignment for GI: 254780217 and conserved domain: PRK00411
>PRK00411 cdc6 cell division control protein 6; Reviewed.
Probab=99.31 E-value=8.3e-09 Score=90.57 Aligned_cols=212 Identities=18% Similarity=0.196 Sum_probs=132.0
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC-
Q ss_conf 966555587565610929999999999982---8898166311798988899999999998177998864312101267-
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCS---GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP- 76 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~---~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~- 76 (347)
T Consensus 22 ~L~~~yvP---~~l~~Re~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t 98 (394)
T PRK00411 22 VLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRT 98 (394)
T ss_pred HCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 37998889---989885999999999999997599998479988999989999999999999746896599996966898
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH-
Q ss_conf 88679999678987545300100010134212323788755-4431022211112103532205542400014567776-
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRR-IRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSL- 154 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~-l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~L- 154 (347)
T Consensus 99 ~~~i~~~i~~~-----------L~~-~~~p~~G~s~~~~~~~l~~~l~---~~~~~~ivvLDEiD~L~~~~~~~vLY~L~ 163 (394)
T PRK00411 99 RYAILSEIARS-----------LFG-HPPPSSGLSFDELFDKIAEYLD---ERDRVLIVALDDINYLVEKEGNDVLYSLL 163 (394)
T ss_pred HHHHHHHHHHH-----------HCC-CCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 99999999999-----------569-9898778789999999999861---66975899996554020366508999998
Q ss_pred ---HH-CCCCCCEEEEECCCC---CCCHHHHCEE--EEEECCCCCHHHHHHHHHHH------CCCCCHHHHHHHHHHCC-
Q ss_conf ---63-034341676504433---5730252036--98864799989999999972------78889678999999759-
Q gi|254780217|r 155 ---EE-PPQKVLFILISHASP---TILSTIRSRC--LSIKFNSLSENNLYKALEQL------KIMGWDSKRDFVKIAAY- 218 (347)
Q Consensus 155 ---EE-Pp~~t~fiLit~~~~---~il~TI~SRc--~~i~f~~l~~~~~~~~L~~~------~~~~~~~~~~~~~~~s~- 218 (347)
T Consensus 164 r~~~~~~~~~~~vI~IsN~~~~~~~Ldprv~S~l~~~~i~F~PY~~~qL~~IL~~R~~~af~~gv~~~~~i~~~A~~~a~ 243 (394)
T PRK00411 164 RAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFGPEEIVFPPYTADEIFDILKDRVEEGFYPGVVSDEVLELIADLTGR 243 (394)
T ss_pred HCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 54022688738999997687177664077750278628985899989999999999984145567897899999999855
Q ss_pred --CCHHHHHHHHCC
Q ss_conf --897899988145
Q gi|254780217|r 219 --GSVARAIKILHY 230 (347)
Q Consensus 219 --Gs~~~A~~ll~~ 230 (347)
T Consensus 244 ~~GDaR~Aldllr~ 257 (394)
T PRK00411 244 EHGDARVAIDLLRR 257 (394)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 04758999999999