HHsearch alignment for GI: 254780217 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.14 E-value=2e-08 Score=87.53 Aligned_cols=180 Identities=17% Similarity=0.145 Sum_probs=114.5
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC-----------C-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 7565610929999999999982-----------8-898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS-----------G-RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~-----------~-~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
T Consensus 129 v~~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~--------------- 193 (390)
T PRK03992 129 VTYEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--------------- 193 (390)
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---------------
T ss_conf 98466149899999999999998659899997699999727868989997899999999874888---------------
Q ss_pred CCHHHHHHHCCCCCCEEEECCCC-HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----------
Q ss_conf 88679999678987545300100-010134212323788755443102221111210353220554240-----------
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSL-NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----------- 144 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~-~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----------- 144 (347)
T Consensus 194 ---------------fi~v~~s~l~sk--~vG--esek~vr~lF~~Ar----~~aP~IiFiDEiDai~~~R~~~~~~g~~ 250 (390)
T PRK03992 194 ---------------FIRVVGSELVQK--FIG--EGARLVRELFELAR----EKAPSIIFIDEIDAIAAKRTDSGTSGDR 250 (390)
T ss_pred ---------------EEEEEHHHHHHC--CCC--HHHHHHHHHHHHHH----HHCCCEEEHHHHHHHHCCCCCCCCCCCH
T ss_conf ---------------799667997524--541--79999999999999----7099089714325663356778886208
Q ss_pred HHHH---HHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHHCCC---CCHHHHHHH
Q ss_conf 0014---5677766--303434167650443357302520--36-98864799989999999972788---896789999
Q gi|254780217|r 145 NAAN---ALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQLKIM---GWDSKRDFV 213 (347)
Q Consensus 145 ~AaN---ALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~~~~---~~~~~~~~~ 213 (347)
T Consensus 251 ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~~~l~~dvdl~~l 330 (390)
T PRK03992 251 EVQRTLMQLLAEMDGFDPRGNVKIIAATNRPDILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEEL 330 (390)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 89999999999744877778827996069810059777547765238870894999999999998479999988899999
Q ss_pred HHHCCCCHHHHHH
Q ss_conf 9975989789998
Q gi|254780217|r 214 KIAAYGSVARAIK 226 (347)
Q Consensus 214 ~~~s~Gs~~~A~~ 226 (347)
T Consensus 331 A~~T~G~SGADI~ 343 (390)
T PRK03992 331 AELTEGASGADLK 343 (390)
T ss_pred HHHCCCCCHHHHH
T ss_conf 9768799899999