HHsearch alignment for GI: 254780217 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=99.89 E-value=4e-21 Score=189.74 Aligned_cols=156 Identities=16% Similarity=0.110 Sum_probs=113.8
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH-
Q ss_conf 3102221111210353220554240001456777663034341676504433573025203698864799989999999-
Q gi|254780217|r 120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL- 198 (347)
Q Consensus 120 ~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L- 198 (347)
T Consensus 636 ef~~~~~-~~~~s~kii~~a~~~t~d~~~~~~r~~~~~~~~~~~~~SCNYsSKIIePIQSRCavFRF~PL~~e~v~~RL~ 714 (863)
T PRK04132 636 EFIEKVV-DGYVSEKIIKKEYIGYKDVYDITCHNDHSFIANGFVSHNCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLR 714 (863)
T ss_pred HHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCEEEEEECCCCHHHHHHHHH
T ss_conf 9997534-455304435788866577999998778764205617986676040741665562478836899999999999
Q ss_pred ---HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf ---97278889678999999759897899988145779999999998403234322899999999983167699999999
Q gi|254780217|r 199 ---EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI 275 (347)
Q Consensus 199 ---~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (347)
T Consensus 715 ~Ia~~Egv~itedGleAI~~~aeGDMRkAIN~LQsaa~~~~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~A~~~L~ 794 (863)
T PRK04132 715 YIAENEGLELTEEGLQAILYVAEGDMRRAINVLQAAAALDTKITDENVFKVASRARPEDIREMMLLALKGNFLKAREKLR 794 (863)
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99997499767789999999756748999999999986169878889999708999899999999997299899999999
Q ss_pred H
Q ss_conf 9
Q gi|254780217|r 276 E 276 (347)
Q Consensus 276 ~ 276 (347)
T Consensus 795 ~ 795 (863)
T PRK04132 795 E 795 (863)
T ss_pred H
T ss_conf 9