HHsearch alignment for GI: 254780217 and conserved domain: PRK04132

>PRK04132 replication factor C small subunit; Provisional.
Probab=99.89  E-value=4e-21  Score=189.74  Aligned_cols=156  Identities=16%  Similarity=0.110  Sum_probs=113.8

Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH-
Q ss_conf             3102221111210353220554240001456777663034341676504433573025203698864799989999999-
Q gi|254780217|r  120 YFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL-  198 (347)
Q Consensus       120 ~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L-  198 (347)
T Consensus       636 ef~~~~~-~~~~s~kii~~a~~~t~d~~~~~~r~~~~~~~~~~~~~SCNYsSKIIePIQSRCavFRF~PL~~e~v~~RL~  714 (863)
T PRK04132        636 EFIEKVV-DGYVSEKIIKKEYIGYKDVYDITCHNDHSFIANGFVSHNCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLR  714 (863)
T ss_pred             HHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCEEEEEECCCCHHHHHHHHH
T ss_conf             9997534-455304435788866577999998778764205617986676040741665562478836899999999999


Q ss_pred             ---HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             ---97278889678999999759897899988145779999999998403234322899999999983167699999999
Q gi|254780217|r  199 ---EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLI  275 (347)
Q Consensus       199 ---~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (347)
T Consensus       715 ~Ia~~Egv~itedGleAI~~~aeGDMRkAIN~LQsaa~~~~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~A~~~L~  794 (863)
T PRK04132        715 YIAENEGLELTEEGLQAILYVAEGDMRRAINVLQAAAALDTKITDENVFKVASRARPEDIREMMLLALKGNFLKAREKLR  794 (863)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99997499767789999999756748999999999986169878889999708999899999999997299899999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780217|r  276 E  276 (347)
Q Consensus       276 ~  276 (347)
T Consensus       795 ~  795 (863)
T PRK04132        795 E  795 (863)
T ss_pred             H
T ss_conf             9