HHsearch alignment for GI: 254780217 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=99.95 E-value=7e-26 Score=228.05 Aligned_cols=186 Identities=25% Similarity=0.345 Sum_probs=151.6
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHH---CCCCCE-EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 655558756561092999999999998---288981-6631179898889999999999817799886431210126788
Q gi|254780217|r 3 DRAFDPVYNQRLFGHEDIEKFLSQYYC---SGRMHH-ALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 3 ~~~~~p~~~~~i~G~~~~~~~L~~~~~---~~~l~h-a~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
T Consensus 5 veKYRPk~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~------------------ 66 (403)
T PRK04195 5 VEKYRPKSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGW------------------ 66 (403)
T ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC------------------
T ss_conf 40218998999858899999999999998739965746998893998799999999998499------------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-CCCC-CCCHHHHHHHHHHCCHH----HHHHHHH
Q ss_conf 6799996789875453001000101342123237887554431022-2111-12103532205542400----0145677
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-TANT-GYWRVIMIDPVDGMNRN----AANALLK 152 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-~~~~-~~~Ki~IId~ad~ln~~----AaNALLK 152 (347)
T Consensus 67 ------------~viElNAS-D~R--------~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~ 125 (403)
T PRK04195 67 ------------EVIELNAS-DQR--------TKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILE 125 (403)
T ss_pred ------------CEEEECCC-CCC--------CHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ------------85997710-114--------789999999987606887788734999634344572444799999999
Q ss_pred HHHHCCCCCCEEEEECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 7663034341676504433-573025203698864799989999999----97278889678999999759897899988
Q gi|254780217|r 153 SLEEPPQKVLFILISHASP-TILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKI 227 (347)
Q Consensus 153 ~LEEPp~~t~fiLit~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~l 227 (347)
T Consensus 126 ~ik~s--~~PiIli~Nd~~~~~~~~lrs~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~aIN~ 203 (403)
T PRK04195 126 IIKKA--KNPIILTANDPYDPSLRPLRNACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEALREIAERSGGDLRSAIND 203 (403)
T ss_pred HHHCC--CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 98548--8708998268455671779976612217994999999999999997699999999999999879739999999
Q ss_pred HC
Q ss_conf 14
Q gi|254780217|r 228 LH 229 (347)
Q Consensus 228 l~ 229 (347)
T Consensus 204 LQ 205 (403)
T PRK04195 204 LQ 205 (403)
T ss_pred HH
T ss_conf 99