HHsearch alignment for GI: 254780217 and conserved domain: PRK05564

>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=430.54  Aligned_cols=296  Identities=22%  Similarity=0.300  Sum_probs=223.6

Q ss_pred             CCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCC
Q ss_conf             75656109299999999999828898166311798988899999999998177998864312101267886799996789
Q gi|254780217|r    9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA   88 (347)
Q Consensus         9 ~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (347)
T Consensus         1 M~f~~iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~----------------------~~~   58 (313)
T PRK05564          1 MSFRTIIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSE----------------------QRE   58 (313)
T ss_pred             CCHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC----------------------CCC
T ss_conf             9832326829999999999987998750432799985099999999999828997----------------------788


Q ss_pred             CCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             87545300100010134212323788755443102221111210353220554240001456777663034341676504
Q gi|254780217|r   89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH  168 (347)
Q Consensus        89 hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~  168 (347)
T Consensus        59 ~~D~~~~~~~-------~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~  131 (313)
T PRK05564         59 YVDIIEYKPI-------NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCE  131 (313)
T ss_pred             CCCEEEEECC-------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf             9865886332-------256999899999999984086258956999807777589999998455036899858998649


Q ss_pred             CCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHH-HHHHHHHHHCCCC
Q ss_conf             433573025203698864799989999999972788896789999997598978999881457799-9999999840323
Q gi|254780217|r  169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK-IISSYIDLIHIPR  247 (347)
Q Consensus       169 ~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~-~~~~~~~~l~~~~  247 (347)
T Consensus       132 ~~~~lLpTI~SRCQ~~~f~~l~~~~i~~~L~~~~~~~~~~~~~~~~~~s~G~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  211 (313)
T PRK05564        132 NLEQILDTIKSRCQIYKLNRLSKEDIEKFISYKYNDIDEENKNSAIAFSDGIPGKVEKFIEDDSLKDIRNMSLEILKDID  211 (313)
T ss_pred             CHHHCCCHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             83547577870653566899899999999998625899999999999829987999998405799999999999999998


Q ss_pred             CCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHH------------HHHHHHHHHHHHHHHH
Q ss_conf             432289999999998316--7699999999999999999999-865410045------------4899999999999999
Q gi|254780217|r  248 QEYALQKMQQIADELLSQ--DQKIAFDFLIEFILKEICKSAK-AAALSGQLE------------EADQIAQIYFSLVKRV  312 (347)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~------------~~~~l~~~~~~i~~~~  312 (347)
T Consensus       212 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~k~~~~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~l~~a~  290 (313)
T PRK05564        212 K-SNINIIIKYENFLISYKENWEEILTCILSYIRDSLLFKETGNNELIINVDKIEDIKEISEKYSYKKLNKMIEIINDAR  290 (313)
T ss_pred             C-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             6-799999999999998693499999999999999998515598320168889999999985499999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             98762279979999999999972
Q gi|254780217|r  313 HAFSMYNLDRRQMIFHLLSKARE  335 (347)
Q Consensus       313 ~~~~~~NLd~~~~ll~ll~~l~~  335 (347)
T Consensus       291 ~~l-~~n~N~~L~le~lllkl~e  312 (313)
T PRK05564        291 NNL-SSNTNSTLVFDSMLIKMQE  312 (313)
T ss_pred             HHH-HHCCCHHHHHHHHHHHHHH
T ss_conf             998-7459989999999998843