HHsearch alignment for GI: 254780217 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=430.54 Aligned_cols=296 Identities=22% Similarity=0.300 Sum_probs=223.6
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCC
Q ss_conf 75656109299999999999828898166311798988899999999998177998864312101267886799996789
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHA 88 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (347)
T Consensus 1 M~f~~iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~----------------------~~~ 58 (313)
T PRK05564 1 MSFRTIIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSE----------------------QRE 58 (313)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC----------------------CCC
T ss_conf 9832326829999999999987998750432799985099999999999828997----------------------788
Q ss_pred CCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 87545300100010134212323788755443102221111210353220554240001456777663034341676504
Q gi|254780217|r 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISH 168 (347)
Q Consensus 89 hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~ 168 (347)
T Consensus 59 ~~D~~~~~~~-------~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~ 131 (313)
T PRK05564 59 YVDIIEYKPI-------NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred CCCEEEEECC-------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 9865886332-------256999899999999984086258956999807777589999998455036899858998649
Q ss_pred CCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHH-HHHHHHHHHCCCC
Q ss_conf 433573025203698864799989999999972788896789999997598978999881457799-9999999840323
Q gi|254780217|r 169 ASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDK-IISSYIDLIHIPR 247 (347)
Q Consensus 169 ~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~-~~~~~~~~l~~~~ 247 (347)
T Consensus 132 ~~~~lLpTI~SRCQ~~~f~~l~~~~i~~~L~~~~~~~~~~~~~~~~~~s~G~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 211 (313)
T PRK05564 132 NLEQILDTIKSRCQIYKLNRLSKEDIEKFISYKYNDIDEENKNSAIAFSDGIPGKVEKFIEDDSLKDIRNMSLEILKDID 211 (313)
T ss_pred CHHHCCCHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 83547577870653566899899999999998625899999999999829987999998405799999999999999998
Q ss_pred CCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHH------------HHHHHHHHHHHHHHHH
Q ss_conf 432289999999998316--7699999999999999999999-865410045------------4899999999999999
Q gi|254780217|r 248 QEYALQKMQQIADELLSQ--DQKIAFDFLIEFILKEICKSAK-AAALSGQLE------------EADQIAQIYFSLVKRV 312 (347)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~------------~~~~l~~~~~~i~~~~ 312 (347)
T Consensus 212 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~k~~~~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~l~~a~ 290 (313)
T PRK05564 212 K-SNINIIIKYENFLISYKENWEEILTCILSYIRDSLLFKETGNNELIINVDKIEDIKEISEKYSYKKLNKMIEIINDAR 290 (313)
T ss_pred C-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 6-799999999999998693499999999999999998515598320168889999999985499999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 98762279979999999999972
Q gi|254780217|r 313 HAFSMYNLDRRQMIFHLLSKARE 335 (347)
Q Consensus 313 ~~~~~~NLd~~~~ll~ll~~l~~ 335 (347)
T Consensus 291 ~~l-~~n~N~~L~le~lllkl~e 312 (313)
T PRK05564 291 NNL-SSNTNSTLVFDSMLIKMQE 312 (313)
T ss_pred HHH-HHCCCHHHHHHHHHHHHHH
T ss_conf 998-7459989999999998843