HHsearch alignment for GI: 254780217 and conserved domain: PRK05574
>PRK05574 holA DNA polymerase III subunit delta; Reviewed.
Probab=98.83 E-value=9.9e-06 Score=65.79 Aligned_cols=169 Identities=9% Similarity=0.061 Sum_probs=117.8
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 99999998288981663117989888999999999981779988643121012678867999967898754530010001
Q gi|254780217|r 22 KFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNP 101 (347)
Q Consensus 22 ~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~ 101 (347)
T Consensus 5 ~~l~~~lkk~-l~pvyli~G~e~~li~~~~~~i~~~~~~~~~------------------------~~~n~~~~d----- 54 (336)
T PRK05574 5 EQLEAHLKKG-LAPVYLLYGDEPLLLQEAKDAIRAAARAQGF------------------------DERNVFTVD----- 54 (336)
T ss_pred HHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCC------------------------CCEEEEEEE-----
T ss_conf 9999998278-9867999858699999999999998607786------------------------530589971-----
Q ss_pred HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH----HHHHHHHHHHHHCCCCCCEEEEECCCC------
Q ss_conf 0134212323788755443102221111210353220554240----001456777663034341676504433------
Q gi|254780217|r 102 KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR----NAANALLKSLEEPPQKVLFILISHASP------ 171 (347)
Q Consensus 102 k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~----~AaNALLK~LEEPp~~t~fiLit~~~~------ 171 (347)
T Consensus 55 -----~~~~~~---~~l~~~~~t~slf~~krlViv~~~~~~~~k~~~~~l~~l~~~l~~~~~~~~lvli~~~~~~d~~~k 126 (336)
T PRK05574 55 -----GSETDW---DDVLEACQSLPLFSDRKLVELRLPEGLTGKKGEEALKRLEAYLENPLPHTDLLLLAPLPKLDKRKE 126 (336)
T ss_pred -----CCCCCH---HHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH
T ss_conf -----686999---999998648997789759999888766531137999999998707999976999987786336888
Q ss_pred --CCCHHHHCEEEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf --57302520369886479998999999997----2788896789999997598978999881
Q gi|254780217|r 172 --TILSTIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 172 --~il~TI~SRc~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
T Consensus 127 ~~k~~k~l~~~~~~i~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~El 189 (336)
T PRK05574 127 KSAWFKALKKKAVVVEAQTPKEAELPQWIQQRLKQQGLRIDAAALQLLAERVEGNLLALAQEI 189 (336)
T ss_pred HHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 899999998480799806999899999999999984999898999999997211399999999