HHsearch alignment for GI: 254780217 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=96.85 E-value=0.0026 Score=46.32 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=68.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 81663117989888999999999981779988643121012678867999967898754530010001013421232378
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
T Consensus 98 ~~Nvil~G~~GtGKThLA~Alg~~A-~~~G------------------------~--~v~f~~~~~-----------L~~ 139 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAG------------------------H--RVLFATAAQ-----------WVA 139 (254)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-HHCC------------------------C--CEEEEEHHH-----------HHH
T ss_conf 8878998999986899999999999-9869------------------------9--679987799-----------999
Q ss_pred HHHHHHHHCCC---CCCCCCCHHHHHHHHHH--CCHHHHHHHHHHHHHCCCCCCEEEEECCCC--------------CCC
Q ss_conf 87554431022---21111210353220554--240001456777663034341676504433--------------573
Q gi|254780217|r 114 EIRRIRYFLSL---TANTGYWRVIMIDPVDG--MNRNAANALLKSLEEPPQKVLFILISHASP--------------TIL 174 (347)
Q Consensus 114 ~IR~l~~~~~~---~~~~~~~Ki~IId~ad~--ln~~AaNALLK~LEEPp~~t~fiLit~~~~--------------~il 174 (347)
T Consensus 140 ~L~~a~~~g~~~~~~~~l~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye~~S~IiTSn~~~~~W~~~f~D~~la~Ail 219 (254)
T PRK06526 140 RLAAAHHAGRLQDELVKLGRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMI 219 (254)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCHHHHHHHH
T ss_conf 99998855809999998513687765021364478899999999999997458867665898668888648689999999
Q ss_pred HHHHCEEEEEECCCC
Q ss_conf 025203698864799
Q gi|254780217|r 175 STIRSRCLSIKFNSL 189 (347)
Q Consensus 175 ~TI~SRc~~i~f~~l 189 (347)
T Consensus 220 DRL~H~a~~i~~~G~ 234 (254)
T PRK06526 220 DRLVHHAEVISLKGD 234 (254)
T ss_pred HHHCCCEEEEEECCC
T ss_conf 986256289984388