HHsearch alignment for GI: 254780217 and conserved domain: PRK06871
>PRK06871 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=425.08 Aligned_cols=301 Identities=20% Similarity=0.233 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
T Consensus 6 l~~~~~~l~~~~~~~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~s------C~l~~~g~HPD~~~i~ 79 (324)
T PRK06871 6 LQPIYQQITQTFLQGRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHS------CHLFQAGNHPDFHILE 79 (324)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEEE
T ss_conf 5799999999998699543787689999789999999999982899999998888989------9999738999879984
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
T Consensus 80 ~~-------~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~~~fiL~t~~~~~ll~T 152 (324)
T PRK06871 80 PI-------DGKDIGVDQVREINEKVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSASLLAT 152 (324)
T ss_pred CC-------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCH
T ss_conf 67-------88878899999999998646220596699975888857999999999833898783899987870103240
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 52036988647999899999999727888967899999975989789998814577999999999840323432289999
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQ 256 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 256 (347)
T Consensus 153 I~SRCq~~~~~~p~~~~~~~wL~~~~~~-~~~~~~~al~~~~g~pl~A~~~~~~~~~~~r~~~~~~l~~~~~~~~---~~ 228 (324)
T PRK06871 153 IYSRCQTWLIHVPEEQIALDWLQAQSSG-EIQEIQTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRS---PL 228 (324)
T ss_pred HHHCCCCEECCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---HH
T ss_conf 8626612008994999999999974688-7299999999769987999998687799999999999999971689---99
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHHHHHHHHC-CCCHH
Q ss_conf 99999831676999999999999999999998654100------------454899999999999999987622-79979
Q gi|254780217|r 257 QIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ------------LEEADQIAQIYFSLVKRVHAFSMY-NLDRR 323 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------~~~~~~l~~~~~~i~~~~~~~~~~-NLd~~ 323 (347)
T Consensus 229 ~ll~~~~k~~~~~~L~wL~~~l~D~lk~k~g~~~~~in~D~~~~i~~la~~~s~~~L~~~~~~l~~~r~~L~~~~~lN~e 308 (324)
T PRK06871 229 ELLPLFDKEKVLQQLDWLLAFLSDALKAKLDIDSGWINQDLGRGILQFSQQQSAQGLLKAIQIMQKVRSDLLQINAVNQE 308 (324)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999751458889999999999999984488756075889999999998659999999999999999998445787899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999997
Q gi|254780217|r 324 QMIFHLLSKAR 334 (347)
Q Consensus 324 ~~ll~ll~~l~ 334 (347)
T Consensus 309 Lll~~~L~~l~ 319 (324)
T PRK06871 309 LILLDGLTRLV 319 (324)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999