HHsearch alignment for GI: 254780217 and conserved domain: PRK06871

>PRK06871 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=425.08  Aligned_cols=301  Identities=20%  Similarity=0.233  Sum_probs=231.7

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf             29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r   17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS   96 (347)
Q Consensus        17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~   96 (347)
T Consensus         6 l~~~~~~l~~~~~~~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~s------C~l~~~g~HPD~~~i~   79 (324)
T PRK06871          6 LQPIYQQITQTFLQGRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHS------CHLFQAGNHPDFHILE   79 (324)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEEE
T ss_conf             5799999999998699543787689999789999999999982899999998888989------9999738999879984


Q ss_pred             CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf             10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r   97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST  176 (347)
Q Consensus        97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T  176 (347)
T Consensus        80 ~~-------~~k~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~~~fiL~t~~~~~ll~T  152 (324)
T PRK06871         80 PI-------DGKDIGVDQVREINEKVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSASLLAT  152 (324)
T ss_pred             CC-------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCH
T ss_conf             67-------88878899999999998646220596699975888857999999999833898783899987870103240


Q ss_pred             HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             52036988647999899999999727888967899999975989789998814577999999999840323432289999
Q gi|254780217|r  177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQ  256 (347)
Q Consensus       177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~  256 (347)
T Consensus       153 I~SRCq~~~~~~p~~~~~~~wL~~~~~~-~~~~~~~al~~~~g~pl~A~~~~~~~~~~~r~~~~~~l~~~~~~~~---~~  228 (324)
T PRK06871        153 IYSRCQTWLIHVPEEQIALDWLQAQSSG-EIQEIQTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRS---PL  228 (324)
T ss_pred             HHHCCCCEECCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---HH
T ss_conf             8626612008994999999999974688-7299999999769987999998687799999999999999971689---99


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHHHHHHHHC-CCCHH
Q ss_conf             99999831676999999999999999999998654100------------454899999999999999987622-79979
Q gi|254780217|r  257 QIADELLSQDQKIAFDFLIEFILKEICKSAKAAALSGQ------------LEEADQIAQIYFSLVKRVHAFSMY-NLDRR  323 (347)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------~~~~~~l~~~~~~i~~~~~~~~~~-NLd~~  323 (347)
T Consensus       229 ~ll~~~~k~~~~~~L~wL~~~l~D~lk~k~g~~~~~in~D~~~~i~~la~~~s~~~L~~~~~~l~~~r~~L~~~~~lN~e  308 (324)
T PRK06871        229 ELLPLFDKEKVLQQLDWLLAFLSDALKAKLDIDSGWINQDLGRGILQFSQQQSAQGLLKAIQIMQKVRSDLLQINAVNQE  308 (324)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             99999751458889999999999999984488756075889999999998659999999999999999998445787899


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999997
Q gi|254780217|r  324 QMIFHLLSKAR  334 (347)
Q Consensus       324 ~~ll~ll~~l~  334 (347)
T Consensus       309 Lll~~~L~~l~  319 (324)
T PRK06871        309 LILLDGLTRLV  319 (324)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999