HHsearch alignment for GI: 254780217 and conserved domain: PRK06872

>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=100.00  E-value=0  Score=436.34  Aligned_cols=249  Identities=23%  Similarity=0.371  Sum_probs=216.9

Q ss_pred             CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf             96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r    1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF   80 (347)
Q Consensus         1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~   80 (347)
T Consensus         5 vlark~rp~~f~~~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~------   78 (696)
T PRK06872          5 VLARKWRPKTFSEVVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECEN------   78 (696)
T ss_pred             HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf             77765188756452385999999999997198630475117898888899999999867899999997888622------


Q ss_pred             HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r   81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK  160 (347)
Q Consensus        81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~  160 (347)
T Consensus        79 c~~i~~g~~~d~~eidaas~---------~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~~~fnallktleepp~~  149 (696)
T PRK06872         79 CKAIEEGNFIDLIEIDAASR---------TKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEY  149 (696)
T ss_pred             HHHHHCCCCCCEEEEECCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf             57674478775467505655---------788999999984545776775479997005443899999998750279754


Q ss_pred             CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC-----
Q ss_conf             41676504433573025203698864799989999999----972788896789999997598978999881457-----
Q gi|254780217|r  161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD-----  231 (347)
Q Consensus       161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~-----  231 (347)
T Consensus       150 v~f~latt~~~k~p~tilsrc~~f~~~~~~~~~i~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~~  229 (696)
T PRK06872        150 VKFLLATTDPQKLPITILSRCMQFHLKALDQTQIAQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMSN  229 (696)
T ss_pred             EEEEEECCCHHHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             48998438632274889876653002689999999999999998499779999999999758956778889999999758


Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf             7999999999840323432289999999998316769
Q gi|254780217|r  232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQK  268 (347)
Q Consensus       232 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  268 (347)
T Consensus       230 g~~~~~~v~~mlg~~~~----~~~~~l~~a~~~~d~~  262 (696)
T PRK06872        230 ANITLDVVSNMLGLLDD----NQPIDILYALQQGNGE  262 (696)
T ss_pred             CCCCHHHHHHHHCCCCH----HHHHHHHHHHHHCCHH
T ss_conf             96169999998588877----7999999999955899