HHsearch alignment for GI: 254780217 and conserved domain: PRK06872
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=100.00 E-value=0 Score=436.34 Aligned_cols=249 Identities=23% Similarity=0.371 Sum_probs=216.9
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 5 vlark~rp~~f~~~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~------ 78 (696)
T PRK06872 5 VLARKWRPKTFSEVVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECEN------ 78 (696)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77765188756452385999999999997198630475117898888899999999867899999997888622------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 79 c~~i~~g~~~d~~eidaas~---------~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~~~fnallktleepp~~ 149 (696)
T PRK06872 79 CKAIEEGNFIDLIEIDAASR---------TKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEY 149 (696)
T ss_pred HHHHHCCCCCCEEEEECCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 57674478775467505655---------788999999984545776775479997005443899999998750279754
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC-----
Q ss_conf 41676504433573025203698864799989999999----972788896789999997598978999881457-----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYD----- 231 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~----- 231 (347)
T Consensus 150 v~f~latt~~~k~p~tilsrc~~f~~~~~~~~~i~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~~ 229 (696)
T PRK06872 150 VKFLLATTDPQKLPITILSRCMQFHLKALDQTQIAQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMSN 229 (696)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 48998438632274889876653002689999999999999998499779999999999758956778889999999758
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 7999999999840323432289999999998316769
Q gi|254780217|r 232 CDKIISSYIDLIHIPRQEYALQKMQQIADELLSQDQK 268 (347)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (347)
T Consensus 230 g~~~~~~v~~mlg~~~~----~~~~~l~~a~~~~d~~ 262 (696)
T PRK06872 230 ANITLDVVSNMLGLLDD----NQPIDILYALQQGNGE 262 (696)
T ss_pred CCCCHHHHHHHHCCCCH----HHHHHHHHHHHHCCHH
T ss_conf 96169999998588877----7999999999955899