HHsearch alignment for GI: 254780217 and conserved domain: PRK06964
>PRK06964 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=420.22 Aligned_cols=299 Identities=21% Similarity=0.250 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf 299999999999828898166311798988899999999998177998-8643121012678867999967898754530
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDF-SKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~-~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i 95 (347)
T Consensus 6 ~~~~w~~l~~--~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~s------C~~~~~~~HPD~~~i 77 (342)
T PRK06964 6 QTDDWNRLQA--LRARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAA------CTWFAQGNHPDYRIV 77 (342)
T ss_pred CHHHHHHHHH--CCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEE
T ss_conf 5699999998--06871305765799986799999999999838999988897867777------888862799974553
Q ss_pred CCCC--------------------HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 0100--------------------01013421232378875544310222111121035322055424000145677766
Q gi|254780217|r 96 SYSL--------------------NPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE 155 (347)
Q Consensus 96 ~~~~--------------------~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE 155 (347)
T Consensus 78 ~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LE 157 (342)
T PRK06964 78 RPEALAAEAPGAADDAKAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLE 157 (342)
T ss_pred CCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHC
T ss_conf 40021022333210010111222101235655645499999999997007545884499982778738999999999723
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
Q ss_conf 30343416765044335730252036988647999899999999727888967899999975989789998814577999
Q gi|254780217|r 156 EPPQKVLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKI 235 (347)
Q Consensus 156 EPp~~t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~ 235 (347)
T Consensus 158 EPp~~~~~iL~~~~~~~llpTI~SRcq~~~~~~~~~~~~~~~L~~~~v~--~--a~~lla~a~G~p~~Al~l~~~~~~~~ 233 (342)
T PRK06964 158 EPPPGVVFLLVSARIDRLLPTILSRCRQWPMTVPAPEAAAAWLAAQGVA--D--ANALLAEAGGAPLAALALASDENRPL 233 (342)
T ss_pred CCCCCEEEEEEECCHHHCCHHHHHCCEEECCCCCCHHHHHHHHHHCCCC--C--HHHHHHHCCCCHHHHHHHHCCCHHHH
T ss_conf 7987848999869925483688767643028995999999999873986--3--99999880999899998716735999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHH------------HHHH
Q ss_conf 999999840323432289999999998316769999999999999999999986541---0045------------4899
Q gi|254780217|r 236 ISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS---GQLE------------EADQ 300 (347)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~------------~~~~ 300 (347)
T Consensus 234 ~~~~l~~L~~~~~~----~~~~~ae~~~k~~~~~----~l~~l~~w~~DlL~~~~~~~~~~~~~~~~~l~~lA~~~~~~~ 305 (342)
T PRK06964 234 RDWTLGQLAAGAAC----DAFACGETLQKLPVPA----VLGWLQRWLYDLLAQRLAGAPRYFPAQRAALARCAAAADANA 305 (342)
T ss_pred HHHHHHHHHCCCCC----CHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 99999998643325----7999999984478999----999999999999999825981126779999999885089999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999987622799799999999999727
Q gi|254780217|r 301 IAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKAREC 336 (347)
Q Consensus 301 l~~~~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~~ 336 (347)
T Consensus 306 L~~~~~~l~~~r-~~l~~nvN~~L~lE~LlL~~~e~ 340 (342)
T PRK06964 306 FARFAKAVTRQR-AVENHPLAARLVFEELFLGYREL 340 (342)
T ss_pred HHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999-98629987799999999999997