HHsearch alignment for GI: 254780217 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=94.43 E-value=0.0071 Score=42.78 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=66.2
Q ss_pred EEEECCCCCCCHHHHHHHHHH-HHHCCCCCCCCCHHHCCCCCCCHH-HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 663117989888999999999-981779988643121012678867-999967898754530010001013421232378
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYAG-HVLQNPDFSKAPVRMCNPDPCSPF-VKQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A~-~llc~~~~~~~~~~~~~~~~~~~~-~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
T Consensus 178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~---kVaLIT~DTYRIgAvEQLkt--Ya~IlgvP---------v~vv~~~~ 243 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAARCVMRHGAS---KVALLTTDSYRIGGHEQLRI--YGKILGVP---------VHAVKDAA 243 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCC---CEEEEECCCCCHHHHHHHHH--HHHHCCCE---------EEEECCHH
T ss_conf 589866888763758999999999983898---37999768754789999999--99875955---------99959999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH-HHHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHCEEEEEECC
Q ss_conf 87554431022211112103532205542400-01456777663--0343416765044335730252036988647
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN-AANALLKSLEE--PPQKVLFILISHASPTILSTIRSRCLSIKFN 187 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-AaNALLK~LEE--Pp~~t~fiLit~~~~~il~TI~SRc~~i~f~ 187 (347)
T Consensus 244 eL~~aL~~------l~~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~ 314 (404)
T PRK06995 244 DLRLALAE------LRNKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLA 314 (404)
T ss_pred HHHHHHHH------HCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999997------089999998099989768889999999973578852899977989999999999984469998