HHsearch alignment for GI: 254780217 and conserved domain: PRK06995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=94.43  E-value=0.0071  Score=42.78  Aligned_cols=132  Identities=17%  Similarity=0.191  Sum_probs=66.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHH-HHHCCCCCCCCCHHHCCCCCCCHH-HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf             663117989888999999999-981779988643121012678867-999967898754530010001013421232378
Q gi|254780217|r   36 ALLFEGEQGIGKATLGFRYAG-HVLQNPDFSKAPVRMCNPDPCSPF-VKQMASHALHDFLYLSYSLNPKTGKWRTVITVD  113 (347)
Q Consensus        36 a~Lf~Gp~GiGK~~~A~~~A~-~llc~~~~~~~~~~~~~~~~~~~~-~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd  113 (347)
T Consensus       178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~---kVaLIT~DTYRIgAvEQLkt--Ya~IlgvP---------v~vv~~~~  243 (404)
T PRK06995        178 VFALVGPTGVGKTTTTAKLAARCVMRHGAS---KVALLTTDSYRIGGHEQLRI--YGKILGVP---------VHAVKDAA  243 (404)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHCCC---CEEEEECCCCCHHHHHHHHH--HHHHCCCE---------EEEECCHH
T ss_conf             589866888763758999999999983898---37999768754789999999--99875955---------99959999


Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH-HHHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHCEEEEEECC
Q ss_conf             87554431022211112103532205542400-01456777663--0343416765044335730252036988647
Q gi|254780217|r  114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN-AANALLKSLEE--PPQKVLFILISHASPTILSTIRSRCLSIKFN  187 (347)
Q Consensus       114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-AaNALLK~LEE--Pp~~t~fiLit~~~~~il~TI~SRc~~i~f~  187 (347)
T Consensus       244 eL~~aL~~------l~~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~  314 (404)
T PRK06995        244 DLRLALAE------LRNKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLA  314 (404)
T ss_pred             HHHHHHHH------HCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf             99999997------089999998099989768889999999973578852899977989999999999984469998