HHsearch alignment for GI: 254780217 and conserved domain: PRK07132
>PRK07132 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=4.3e-39 Score=334.40 Aligned_cols=200 Identities=16% Similarity=0.251 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCC-CEEEE
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987-54530
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALH-DFLYL 95 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hp-d~~~i 95 (347)
T Consensus 3 ~e~iv~~L~nai~~~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~------------------~~~~~~~~i 64 (303)
T PRK07132 3 DNNIIKSLDNLAKQNKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLE------------------ELPYNIFLF 64 (303)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC------------------CCCCCCEEE
T ss_conf 03899999999984997616886789986799999999999729987888754------------------565323041
Q ss_pred CCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 01000101342123237887554431022211-11210353220554240001456777663034341676504433573
Q gi|254780217|r 96 SYSLNPKTGKWRTVITVDEIRRIRYFLSLTAN-TGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 (347)
Q Consensus 96 ~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~-~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il 174 (347)
T Consensus 65 d~--------~~~~i~~~~i~~~i~~~~~~~~~~~~~Kv~IIdea~~lt~~A~NaLLKtLEEPp~~~~fil~t~~~~~il 136 (303)
T PRK07132 65 DI--------FDEDLSKEEFLSAIEKFSFSSFVSNQKKILIIKNIEKTSNSSLNALLKTIEEPSKNTYFLLTTKNINKVI 136 (303)
T ss_pred CC--------CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCHHHCC
T ss_conf 33--------2220016889999999973665568706999816553399999999987038986848999728824383
Q ss_pred HHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 02520369886479998999999997278889678999999759897899988145779999999998403
Q gi|254780217|r 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHI 245 (347)
Q Consensus 175 ~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~ 245 (347)
T Consensus 137 ~TI~SRCq~~~f~~~~~~~i~~~l~e~~~--~~e~~~~~a~~~~-n~~~a~~~~~~e~~~~~~~~~~~l~~ 204 (303)
T PRK07132 137 PTIVSRCQVINVKEPDQQKILAKLLSQNK--EKEFEKFYAYIFK-NFEDAIKYISKISENLVKKFIKALNK 204 (303)
T ss_pred HHHHHCCEEEECCCCCHHHHHHHHHHCCC--CCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77863665663788999999999986477--5278999999974-75889999864239999999999998