HHsearch alignment for GI: 254780217 and conserved domain: PRK08058
>PRK08058 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=459.55 Aligned_cols=308 Identities=22% Similarity=0.252 Sum_probs=231.9
Q ss_pred CCHHHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC
Q ss_conf 75656109-29999999999982889816631179898889999999999817799886431210126788679999678
Q gi|254780217|r 9 VYNQRLFG-HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH 87 (347)
Q Consensus 9 ~~~~~i~G-~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (347)
T Consensus 2 ~~~~~~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~------C~~~~~~ 75 (329)
T PRK08058 2 MTWEQLTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTN------CKRIESG 75 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCC
T ss_conf 9778888318999999999998599661565578999889999999999973999999998878889------9998769
Q ss_pred CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98754530010001013421232378875544310222111121035322055424000145677766303434167650
Q gi|254780217|r 88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS 167 (347)
Q Consensus 88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit 167 (347)
T Consensus 76 ~HPD~~~i~p--------~~~~i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t 147 (329)
T PRK08058 76 NHPDVHLVAP--------DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLT 147 (329)
T ss_pred CCCCEEEECC--------CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9997677456--------61407799999999996438757886799973477629999999999864689786799872
Q ss_pred CCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHH-HHHHHHHHHHCCC
Q ss_conf 443357302520369886479998999999997278889678999999759897899988145779-9999999984032
Q gi|254780217|r 168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD-KIISSYIDLIHIP 246 (347)
Q Consensus 168 ~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~-~~~~~~~~~l~~~ 246 (347)
T Consensus 148 ~~~~~lLpTI~SRCq~i~f~~~~~~~i~~~L~~~~i--~~~~a~l~a~~~-gs~~~A~~l~~~~~~~~~~~~~~~~~~~~ 224 (329)
T PRK08058 148 ENKHQILPTILSRCQVVEFRPLPPESLIQRLQEEGI--SESLATLLAQLT-NSVEEALALSEDDWFAQARALVIKLYEAL 224 (329)
T ss_pred CCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHCCC--CHHHHHHHHHHC-CCHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 996664368863142565889999999999998799--989999999878-99999998842615899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CH---H---------HHHHHHHHHHHHH
Q ss_conf 343228999999999831-67699999999999999999999865410----04---5---------4899999999999
Q gi|254780217|r 247 RQEYALQKMQQIADELLS-QDQKIAFDFLIEFILKEICKSAKAAALSG----QL---E---------EADQIAQIYFSLV 309 (347)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~---~---------~~~~l~~~~~~i~ 309 (347)
T Consensus 225 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~~~~d~~~~l~~~a~~~~~~~l~~~~~~i~ 303 (329)
T PRK08058 225 HK-GDLLSFVFVQTKWMPLFKEKDQQQLGLDLLLLIYRDLLYVQLGEEDRLVFREQKEELQQLALSYSQQQIVAALELIL 303 (329)
T ss_pred HC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 76-88999999999999870188999999999999999999874175200117999999999985399999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99998762279979999999999972
Q gi|254780217|r 310 KRVHAFSMYNLDRRQMIFHLLSKARE 335 (347)
Q Consensus 310 ~~~~~~~~~NLd~~~~ll~ll~~l~~ 335 (347)
T Consensus 304 e~~~~l-~~N~N~~L~lE~lll~L~e 328 (329)
T PRK08058 304 EAKRRL-NSNVNFQLVMEQLVLRLQE 328 (329)
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHC
T ss_conf 999999-8558999999999996428