HHsearch alignment for GI: 254780217 and conserved domain: PRK08058

>PRK08058 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=459.55  Aligned_cols=308  Identities=22%  Similarity=0.252  Sum_probs=231.9

Q ss_pred             CCHHHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCC
Q ss_conf             75656109-29999999999982889816631179898889999999999817799886431210126788679999678
Q gi|254780217|r    9 VYNQRLFG-HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASH   87 (347)
Q Consensus         9 ~~~~~i~G-~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~   87 (347)
T Consensus         2 ~~~~~~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~------C~~~~~~   75 (329)
T PRK08058          2 MTWEQLTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTN------CKRIESG   75 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCC
T ss_conf             9778888318999999999998599661565578999889999999999973999999998878889------9998769


Q ss_pred             CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             98754530010001013421232378875544310222111121035322055424000145677766303434167650
Q gi|254780217|r   88 ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILIS  167 (347)
Q Consensus        88 ~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit  167 (347)
T Consensus        76 ~HPD~~~i~p--------~~~~i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t  147 (329)
T PRK08058         76 NHPDVHLVAP--------DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLT  147 (329)
T ss_pred             CCCCEEEECC--------CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             9997677456--------61407799999999996438757886799973477629999999999864689786799872


Q ss_pred             CCCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHH-HHHHHHHHHHCCC
Q ss_conf             443357302520369886479998999999997278889678999999759897899988145779-9999999984032
Q gi|254780217|r  168 HASPTILSTIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCD-KIISSYIDLIHIP  246 (347)
Q Consensus       168 ~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~-~~~~~~~~~l~~~  246 (347)
T Consensus       148 ~~~~~lLpTI~SRCq~i~f~~~~~~~i~~~L~~~~i--~~~~a~l~a~~~-gs~~~A~~l~~~~~~~~~~~~~~~~~~~~  224 (329)
T PRK08058        148 ENKHQILPTILSRCQVVEFRPLPPESLIQRLQEEGI--SESLATLLAQLT-NSVEEALALSEDDWFAQARALVIKLYEAL  224 (329)
T ss_pred             CCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHCCC--CHHHHHHHHHHC-CCHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             996664368863142565889999999999998799--989999999878-99999998842615899999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CH---H---------HHHHHHHHHHHHH
Q ss_conf             343228999999999831-67699999999999999999999865410----04---5---------4899999999999
Q gi|254780217|r  247 RQEYALQKMQQIADELLS-QDQKIAFDFLIEFILKEICKSAKAAALSG----QL---E---------EADQIAQIYFSLV  309 (347)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~---~---------~~~~l~~~~~~i~  309 (347)
T Consensus       225 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~~~~d~~~~l~~~a~~~~~~~l~~~~~~i~  303 (329)
T PRK08058        225 HK-GDLLSFVFVQTKWMPLFKEKDQQQLGLDLLLLIYRDLLYVQLGEEDRLVFREQKEELQQLALSYSQQQIVAALELIL  303 (329)
T ss_pred             HC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             76-88999999999999870188999999999999999999874175200117999999999985399999999999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99998762279979999999999972
Q gi|254780217|r  310 KRVHAFSMYNLDRRQMIFHLLSKARE  335 (347)
Q Consensus       310 ~~~~~~~~~NLd~~~~ll~ll~~l~~  335 (347)
T Consensus       304 e~~~~l-~~N~N~~L~lE~lll~L~e  328 (329)
T PRK08058        304 EAKRRL-NSNVNFQLVMEQLVLRLQE  328 (329)
T ss_pred             HHHHHH-HHCCCHHHHHHHHHHHHHC
T ss_conf             999999-8558999999999996428