HHsearch alignment for GI: 254780217 and conserved domain: PRK08487

>PRK08487 DNA polymerase III subunit delta; Validated.
Probab=98.75  E-value=8.2e-06  Score=66.47  Aligned_cols=166  Identities=14%  Similarity=0.111  Sum_probs=115.5

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCH
Q ss_conf             99999999828898166311798988899999999998177998864312101267886799996789875453001000
Q gi|254780217|r   21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLN  100 (347)
Q Consensus        21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~  100 (347)
T Consensus         3 k~e~d~~ik~~~~~~~ylLyG~d~fli~~y~~~I~~~~~~~~~-----------------~---------~~~yfd----   52 (328)
T PRK08487          3 KKELDTLLKQNKLPNAFFLYGEDEFQIEYYAKEISSKFKPEEL-----------------L---------KELYFD----   52 (328)
T ss_pred             HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCH-----------------H---------HHCCCC----
T ss_conf             6899999865988845999568575899999999998577521-----------------1---------200226----


Q ss_pred             HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC------C
Q ss_conf             1013421232378875544310222111121035322055424000145677766303434167650443357------3
Q gi|254780217|r  101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI------L  174 (347)
Q Consensus       101 ~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~i------l  174 (347)
T Consensus        53 E--------~d~~~---i~~~l~~~sLFg~~klv~IK~~~ki~~k~l~~Li~~~~~~~~n~~Ii~~~~~~~k~~~~~k~~  121 (328)
T PRK08487         53 E--------YNFSQ---AKDFLSQGSLFGGKNLLVIKTDKKIPKKELKLLIELCEKNSDNFFIIELYEASMKSSDTEKIF  121 (328)
T ss_pred             C--------CCHHH---HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf             5--------78899---999973515347774799957774552269999998628977789999706133456788877


Q ss_pred             HHHHCEEEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             02520369886479998999999997----2788896789999997598978999881
Q gi|254780217|r  175 STIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL  228 (347)
Q Consensus       175 ~TI~SRc~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll  228 (347)
T Consensus       122 ~~~~-~~~~V~ff~p~~~el~~~i~~~ak~~g~~Is~~al~~L~e~~g~dL~~~~nEL  178 (328)
T PRK08487        122 TPKF-IAKFVRFFKPNAWEALKLLQERAKELGLDIDQNALNHLFEIQNENLYLAANEL  178 (328)
T ss_pred             HHHC-CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             6633-62377513998689999999999991997799999999998596399999899