HHsearch alignment for GI: 254780217 and conserved domain: PRK08487
>PRK08487 DNA polymerase III subunit delta; Validated.
Probab=98.75 E-value=8.2e-06 Score=66.47 Aligned_cols=166 Identities=14% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 99999999828898166311798988899999999998177998864312101267886799996789875453001000
Q gi|254780217|r 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLN 100 (347)
Q Consensus 21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~ 100 (347)
T Consensus 3 k~e~d~~ik~~~~~~~ylLyG~d~fli~~y~~~I~~~~~~~~~-----------------~---------~~~yfd---- 52 (328)
T PRK08487 3 KKELDTLLKQNKLPNAFFLYGEDEFQIEYYAKEISSKFKPEEL-----------------L---------KELYFD---- 52 (328)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCH-----------------H---------HHCCCC----
T ss_conf 6899999865988845999568575899999999998577521-----------------1---------200226----
Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC------C
Q ss_conf 1013421232378875544310222111121035322055424000145677766303434167650443357------3
Q gi|254780217|r 101 PKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTI------L 174 (347)
Q Consensus 101 ~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~i------l 174 (347)
T Consensus 53 E--------~d~~~---i~~~l~~~sLFg~~klv~IK~~~ki~~k~l~~Li~~~~~~~~n~~Ii~~~~~~~k~~~~~k~~ 121 (328)
T PRK08487 53 E--------YNFSQ---AKDFLSQGSLFGGKNLLVIKTDKKIPKKELKLLIELCEKNSDNFFIIELYEASMKSSDTEKIF 121 (328)
T ss_pred C--------CCHHH---HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 5--------78899---999973515347774799957774552269999998628977789999706133456788877
Q ss_pred HHHHCEEEEEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 02520369886479998999999997----2788896789999997598978999881
Q gi|254780217|r 175 STIRSRCLSIKFNSLSENNLYKALEQ----LKIMGWDSKRDFVKIAAYGSVARAIKIL 228 (347)
Q Consensus 175 ~TI~SRc~~i~f~~l~~~~~~~~L~~----~~~~~~~~~~~~~~~~s~Gs~~~A~~ll 228 (347)
T Consensus 122 ~~~~-~~~~V~ff~p~~~el~~~i~~~ak~~g~~Is~~al~~L~e~~g~dL~~~~nEL 178 (328)
T PRK08487 122 TPKF-IAKFVRFFKPNAWEALKLLQERAKELGLDIDQNALNHLFEIQNENLYLAANEL 178 (328)
T ss_pred HHHC-CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 6633-62377513998689999999999991997799999999998596399999899