HHsearch alignment for GI: 254780217 and conserved domain: PRK08691
>PRK08691 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=452.03 Aligned_cols=251 Identities=26% Similarity=0.400 Sum_probs=217.9
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 5 vlark~RP~~F~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~------ 78 (704)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS------ 78 (704)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77765188747564186999999999998199752375027898788899999999967999999997877776------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 79 C~~i~~g~~~D~~EiDaAs~---------~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~~afNAlLKtLEEPP~~ 149 (704)
T PRK08691 79 CTQIDAGRYVDLLEIDAASN---------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (704)
T ss_pred HHHHHCCCCCCEEEEECCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 78785589987477424544---------588999999985346886785359998315443899999999861479756
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH----
Q ss_conf 41676504433573025203698864799989999999----9727888967899999975989789998814577----
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDC---- 232 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~---- 232 (347)
T Consensus 150 v~FilaTTdp~Klp~TIlSRC~~f~l~~~~~~~i~~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~RDalslldQaia~~~ 229 (704)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGS 229 (704)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 08998548846475899988877102689999999999999998398568999999999757857779889999999648
Q ss_pred HH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 99-999999984032343228999999999831676999
Q gi|254780217|r 233 DK-IISSYIDLIHIPRQEYALQKMQQIADELLSQDQKIA 270 (347)
Q Consensus 233 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (347)
T Consensus 230 g~~~~~~v~~mLG~~d~----~~~~~ll~al~~~d~~~~ 264 (704)
T PRK08691 230 GKVAENDVRQMIGAVDK----QYLYELLTGIINQDGAAL 264 (704)
T ss_pred CCCCHHHHHHHHCCCCH----HHHHHHHHHHHHCCHHHH
T ss_conf 96269999998588877----899999999995589999