HHsearch alignment for GI: 254780217 and conserved domain: PRK08699
>PRK08699 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=397.58 Aligned_cols=299 Identities=24% Similarity=0.302 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-CCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf 29999999999982889816631179898889999999999817799-88643121012678867999967898754530
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPD-FSKAPVRMCNPDPCSPFVKQMASHALHDFLYL 95 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~-~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i 95 (347)
T Consensus 6 ~~~~w~~l~~~--~~rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~s------C~~~~~g~HPD~~~i 77 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMS------CHLFGQGSHPDFYEI 77 (325)
T ss_pred CHHHHHHHHHH--CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHH------HHHHHCCCCCCEEEE
T ss_conf 57999999983--4450117975799997899999999999828999888998988888------999865999996885
Q ss_pred CCCCHH-HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 010001-0134212323788755443102221111210353220554240001456777663034341676504433573
Q gi|254780217|r 96 SYSLNP-KTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTIL 174 (347)
Q Consensus 96 ~~~~~~-k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il 174 (347)
T Consensus 78 ~p~~~~~~~g~~~~~I~idqiR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll 157 (325)
T PRK08699 78 TPLADEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVL 157 (325)
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCC
T ss_conf 13445300166556676999999999971086568946999857777589999999998417888848999879846462
Q ss_pred HHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 02520369886479998999999997278889678999999759897899988145779999999998403234322899
Q gi|254780217|r 175 STIRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQK 254 (347)
Q Consensus 175 ~TI~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (347)
T Consensus 158 pTI~SRc~~~~~~~p~~~~~~~~L~~~gv~~~~----~~La~~~gapl~~---~~~~~~~~r~~ll~~L~~~~----~~~ 226 (325)
T PRK08699 158 PTIKSRCRKMVLPAPSHEEALAYLRERGVAEPE----ERLAFHSGAPLFD---EEDELRALRAKLLDILAEPR----LLK 226 (325)
T ss_pred CHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHH----HHHHHCCCCCHHH---HCCHHHHHHHHHHHHHHCCC----CCC
T ss_conf 339864542108995999999999974897678----9997659981123---17436999999999972644----055
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHH------------HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999998316769999999999999999999986541---00454------------8999999999999999876227
Q gi|254780217|r 255 MQQIADELLSQDQKIAFDFLIEFILKEICKSAKAAALS---GQLEE------------ADQIAQIYFSLVKRVHAFSMYN 319 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~------------~~~l~~~~~~i~~~~~~~~~~N 319 (347)
T Consensus 227 ~l~~a~~~~k~~--~~l~~~l~wlq~wl~DL~~~~~~~~~~y~~d~~~~L~~lA~~~~~~~L~~~~~~l-~~~~r~~~~n 303 (325)
T PRK08699 227 ILDYAALFDKEK--LPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQTASGFRPRNVFAAEDML-KQLAPYGFHT 303 (325)
T ss_pred HHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHCCCC
T ss_conf 999999987565--8489999999999999999982698543876899999998708999999999999-9999854599
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 997999999999997278
Q gi|254780217|r 320 LDRRQMIFHLLSKARECN 337 (347)
Q Consensus 320 Ld~~~~ll~ll~~l~~~~ 337 (347)
T Consensus 304 lN~~L~lE~LLl~y~~l~ 321 (325)
T PRK08699 304 LNVKMQIEHLLINYLELK 321 (325)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 878999999999999887