HHsearch alignment for GI: 254780217 and conserved domain: PRK08769
>PRK08769 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=412.13 Aligned_cols=301 Identities=23% Similarity=0.262 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEEC
Q ss_conf 29999999999982889816631179898889999999999817799886431210126788679999678987545300
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLS 96 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~ 96 (347)
T Consensus 9 q~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~---~~~~~------~~~~~i~~g~HPD~~~i~ 79 (319)
T PRK08769 9 QQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPD---PALAQ------RTRQLIAAGTHPDLQLVS 79 (319)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC---CCCCC------HHHHHHHCCCCCCEEEEE
T ss_conf 689999999999769942068758999878999999999998379979---76543------388999668998968775
Q ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 10001013421232378875544310222111121035322055424000145677766303434167650443357302
Q gi|254780217|r 97 YSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQKVLFILISHASPTILST 176 (347)
Q Consensus 97 ~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~fiLit~~~~~il~T 176 (347)
T Consensus 80 ~~~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp~~~~~iL~~~~~~~ll~T 159 (319)
T PRK08769 80 FIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHH
T ss_conf 34444543112348699999999996137202795699980667528999999999822799884899986993658247
Q ss_pred HHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 52036988647999899999999727888967899999975989789998814577999999999840323432289999
Q gi|254780217|r 177 IRSRCLSIKFNSLSENNLYKALEQLKIMGWDSKRDFVKIAAYGSVARAIKILHYDCDKIISSYIDLIHIPRQEYALQKMQ 256 (347)
Q Consensus 177 I~SRc~~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 256 (347)
T Consensus 160 I~SRCq~~~~~~p~~~~~~~~L~~~g~--~~~~a~~~l~~a~g~p~~A~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~l 235 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLSQGV--SERAAQEALDAARGHPGLAAQWLREDGLAVRRAVAQDLEQIASGR--AGAV 235 (319)
T ss_pred HHHCCEEECCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--CHHH
T ss_conf 764850111899699999999997599--918999999982799689999843672778999999999885074--2599
Q ss_pred HHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999831676999-99999999999999999865410045489999999999999998762279979999999999972
Q gi|254780217|r 257 QIADELLSQDQKIA-FDFLIEFILKEICKSAKAAALSGQLEEADQIAQIYFSLVKRVHAFSMYNLDRRQMIFHLLSKARE 335 (347)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~NLd~~~~ll~ll~~l~~ 335 (347)
T Consensus 236 ~~aq~w~~d~~~~~~l~~~~~l~-----~~-~~~~~~~~~~~l~~L~~~l~~~~~-~r~l~~~nvn~~L~le~Lli~~re 308 (319)
T PRK08769 236 DVAQRWTNDGQADQRLRHAADLA-----LA-QASAGLTDPSRLHKLATWFDAANR-TRDLLRTTVRADLAVTELLLAWRE 308 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HH-HHHHCCCCHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999876024578888644044-----42-111116882889999999999999-999853887288999999999997
Q ss_pred HH
Q ss_conf 78
Q gi|254780217|r 336 CN 337 (347)
Q Consensus 336 ~~ 337 (347)
T Consensus 309 ~~ 310 (319)
T PRK08769 309 GE 310 (319)
T ss_pred HC
T ss_conf 44