HHsearch alignment for GI: 254780217 and conserved domain: PRK08770
>PRK08770 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=432.66 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=205.3
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 5 ~~a~k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~------ 78 (663)
T PRK08770 5 VLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPA------ 78 (663)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH------
T ss_conf 77755088746452285999999999997099740476227998888899999999867899999997877877------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 79 c~~i~~~~~~d~~e~daas~---------~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~~fna~lktleepp~~ 149 (663)
T PRK08770 79 CLDIDAGRYIDLLEIDAASN---------TGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEH 149 (663)
T ss_pred HHHHHCCCCCCEEEEECCCC---------CCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 89885489886588646765---------888999999984435887774369997004332899999998740278644
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY 230 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~ 230 (347)
T Consensus 150 v~f~~att~~~k~p~t~~src~~f~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~~q 223 (663)
T PRK08770 150 VKFLLATTDPQKLPVTVLSRCLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQ 223 (663)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 28998548733374899988876343779999999999999998399769999999999747856778889999