HHsearch alignment for GI: 254780217 and conserved domain: PRK10733
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed.
Probab=98.86 E-value=4.5e-08 Score=84.63 Aligned_cols=185 Identities=15% Similarity=0.193 Sum_probs=116.9
Q ss_pred CCCHHHHCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 8756561092999999999998-----------28898166311798988899999999998177998864312101267
Q gi|254780217|r 8 PVYNQRLFGHEDIEKFLSQYYC-----------SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 8 p~~~~~i~G~~~~~~~L~~~~~-----------~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
T Consensus 148 ~vtF~DVaG~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgE-------a~vpF~~~s--- 217 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE-------AKVPFFTIS--- 217 (644)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC-------CCCEEEEEE---
T ss_conf 8771040897899999999999812979999749979985177798998778999998645-------598089978---
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-------------
Q ss_conf 8867999967898754530010001013421232378875544310222111121035322055424-------------
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN------------- 143 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln------------- 143 (347)
T Consensus 218 ------------gsef~e~~v-----------Gvga~rVR~lF~~Ar~----~aP~IIFIDEiDaig~~R~~~~~gg~~e 270 (644)
T PRK10733 218 ------------GSDFVEMFV-----------GVGASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDE 270 (644)
T ss_pred ------------HHHHHHEEE-----------ECCHHHHHHHHHHHHH----CCCEEEEEECHHCCCCCCCCCCCCCCHH
T ss_conf ------------477302225-----------3068999999999996----6997999953220366678988898328
Q ss_pred -HHHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EE-EEEECCCCCHHHHHHHHHHHCCC---CCHHHHHHHH
Q ss_conf -000145677766--303434167650443357302520--36-98864799989999999972788---8967899999
Q gi|254780217|r 144 -RNAANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RC-LSIKFNSLSENNLYKALEQLKIM---GWDSKRDFVK 214 (347)
Q Consensus 144 -~~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc-~~i~f~~l~~~~~~~~L~~~~~~---~~~~~~~~~~ 214 (347)
T Consensus 271 ~~~tlNqlL~EmDGf~~~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~~~R~~ILkvh~~~~~l~~dvdl~~lA 350 (644)
T PRK10733 271 REQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 350 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 88789999999548888787699962699755477771688865599977989889999999996488777311589884
Q ss_pred HHCCCCHHHHH-HHHC
Q ss_conf 97598978999-8814
Q gi|254780217|r 215 IAAYGSVARAI-KILH 229 (347)
Q Consensus 215 ~~s~Gs~~~A~-~ll~ 229 (347)
T Consensus 351 ~~T~GfSGADLaNlvN 366 (644)
T PRK10733 351 RGTPGFSGADLANLVN 366 (644)
T ss_pred CCCCCCCHHHHCCHHH
T ss_conf 4599867033325999