HHsearch alignment for GI: 254780217 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=97.47 E-value=0.00085 Score=50.22 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=73.7
Q ss_pred CCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCCCHHHHHHH
Q ss_conf 7565610929999999999982-88981663117989888999999999981779988643121--01267886799996
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--CNPDPCSPFVKQMA 85 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~--~~~~~~~~~~~~i~ 85 (347)
T Consensus 201 ~~F~~iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH~----~S~R~~~pFv~vnC~alp~~----l~e 272 (513)
T PRK10820 201 SAFSQIVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHL----ASPRAKKPYLALNCASIPED----AVE 272 (513)
T ss_pred CCHHHHEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH----CCCCCCCCCEEEECCCCCHH----HHH
T ss_conf 6877751089999999999999859899889989898249999999996----68878998268889989967----899
Q ss_pred CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC--------
Q ss_conf 789875453001000101342123237887554431022211112103532205542400014567776630--------
Q gi|254780217|r 86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP-------- 157 (347)
Q Consensus 86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP-------- 157 (347)
T Consensus 273 se------LFG~a~~~~~----------------G~fe--~A~gG--TLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~ 326 (513)
T PRK10820 273 SE------LFGHAPEGKK----------------GFFE--QANGG--SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED 326 (513)
T ss_pred HH------HCCCCCCCCC----------------CCEE--ECCCC--EEEEECHHHCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf 98------6387666889----------------7557--85898--899978365999999999999868979965998
Q ss_pred ---CCCCCEEEEECC
Q ss_conf ---343416765044
Q gi|254780217|r 158 ---PQKVLFILISHA 169 (347)
Q Consensus 158 ---p~~t~fiLit~~ 169 (347)
T Consensus 327 ~~~~~dvRiIaaT~~ 341 (513)
T PRK10820 327 HEVHVDVRVICATQK 341 (513)
T ss_pred CEEEEEEEEEECCCH
T ss_conf 535677899962653