HHsearch alignment for GI: 254780217 and conserved domain: PRK10820

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=97.47  E-value=0.00085  Score=50.22  Aligned_cols=127  Identities=17%  Similarity=0.240  Sum_probs=73.7

Q ss_pred             CCHHHHCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH--CCCCCCCHHHHHHH
Q ss_conf             7565610929999999999982-88981663117989888999999999981779988643121--01267886799996
Q gi|254780217|r    9 VYNQRLFGHEDIEKFLSQYYCS-GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRM--CNPDPCSPFVKQMA   85 (347)
Q Consensus         9 ~~~~~i~G~~~~~~~L~~~~~~-~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~--~~~~~~~~~~~~i~   85 (347)
T Consensus       201 ~~F~~iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH~----~S~R~~~pFv~vnC~alp~~----l~e  272 (513)
T PRK10820        201 SAFSQIVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHL----ASPRAKKPYLALNCASIPED----AVE  272 (513)
T ss_pred             CCHHHHEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH----CCCCCCCCCEEEECCCCCHH----HHH
T ss_conf             6877751089999999999999859899889989898249999999996----68878998268889989967----899


Q ss_pred             CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC--------
Q ss_conf             789875453001000101342123237887554431022211112103532205542400014567776630--------
Q gi|254780217|r   86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEP--------  157 (347)
Q Consensus        86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP--------  157 (347)
T Consensus       273 se------LFG~a~~~~~----------------G~fe--~A~gG--TLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~  326 (513)
T PRK10820        273 SE------LFGHAPEGKK----------------GFFE--QANGG--SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED  326 (513)
T ss_pred             HH------HCCCCCCCCC----------------CCEE--ECCCC--EEEEECHHHCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf             98------6387666889----------------7557--85898--899978365999999999999868979965998


Q ss_pred             ---CCCCCEEEEECC
Q ss_conf             ---343416765044
Q gi|254780217|r  158 ---PQKVLFILISHA  169 (347)
Q Consensus       158 ---p~~t~fiLit~~  169 (347)
T Consensus       327 ~~~~~dvRiIaaT~~  341 (513)
T PRK10820        327 HEVHVDVRVICATQK  341 (513)
T ss_pred             CEEEEEEEEEECCCH
T ss_conf             535677899962653