HHsearch alignment for GI: 254780217 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=94.68 E-value=0.22 Score=30.80 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9999999982889816631179898889999999999817
Q gi|254780217|r 21 EKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQ 60 (347)
Q Consensus 21 ~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc 60 (347)
T Consensus 79 r~~i~~~i~~nqV---vii~GeTGsGKTTQ---iPq~~le 112 (1295)
T PRK11131 79 KQDILEAIRDHQV---VIVAGETGSGKTTQ---LPKICLE 112 (1295)
T ss_pred HHHHHHHHHHCCE---EEEECCCCCCHHHH---HHHHHHH
T ss_conf 9999999997996---99976899987889---9999996