HHsearch alignment for GI: 254780217 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=90.75 E-value=0.43 Score=28.41 Aligned_cols=121 Identities=12% Similarity=0.183 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC-CCHHHHHHHC------CCC
Q ss_conf 299999999999828898166311798988899999999998177998864312101267-8867999967------898
Q gi|254780217|r 17 HEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP-CSPFVKQMAS------HAL 89 (347)
Q Consensus 17 ~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~-~~~~~~~i~~------~~h 89 (347)
T Consensus 421 Q~~AI~~v~~a~~~~~-rr-aLl~MATGTGKTrtaial~~rLlk~~~~kR-ILFLvDR~~L~~QA~~~F~~~~~~~~~~~ 497 (1126)
T PRK11448 421 QEDAIQAVEKALANGQ-RE-ILLAMATGTGKTRTAIALMYRLLKAKRFKR-ILFLVDRRALGEQALDAFKDTKIEGNQTF 497 (1126)
T ss_pred HHHHHHHHHHHHHCCC-CC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCE-EEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999998098-54-688724888589899999999996587672-57985658999999998754345456664
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-----CCCCCCCHHHHHHHHHH
Q ss_conf 75453001000101342123237887554431022-----21111210353220554
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-----TANTGYWRVIMIDPVDG 141 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-----~~~~~~~Ki~IId~ad~ 141 (347)
T Consensus 498 ~~~~~v~~l~~~~-~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHR 553 (1126)
T PRK11448 498 ASIYDIKGLTDKF-PEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHR 553 (1126)
T ss_pred CHHHHHHHCCCCC-CCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 0022001025678-7877719997307899875235767799998513798977878