HHsearch alignment for GI: 254780217 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=92.06 E-value=0.17 Score=31.78 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=62.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH-HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCH
Q ss_conf 81663117989888999999999981779988643121012678867-99996789875453001000101342123237
Q gi|254780217|r 34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF-VKQMASHALHDFLYLSYSLNPKTGKWRTVITV 112 (347)
Q Consensus 34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~-~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~v 112 (347)
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~----~KkVALITtDTYRIGAVEQLKT--YAeIMgVPV---------~VV~dp 305 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK----KKTVGFITTDHSRIGTVQQLQD--YVKTIGFEV---------IAVRDE 305 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCC----CCEEEEEECCCCHHHHHHHHHH--HHHHHCCCE---------EEECCH
T ss_conf 7179998999988899999999998616----9808999806634769999999--999849943---------996888
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf 88755443102221111210353220554240--0014567776630-34341676504433573025203698864
Q gi|254780217|r 113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEP-PQKVLFILISHASPTILSTIRSRCLSIKF 186 (347)
Q Consensus 113 d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEP-p~~t~fiLit~~~~~il~TI~SRc~~i~f 186 (347)
T Consensus 306 ~eL~~AL~~lk---dka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~l~i 379 (436)
T PRK11889 306 AAMTRALTYFK---EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHI 379 (436)
T ss_pred HHHHHHHHHHH---HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 99999999876---336888899929898846899999999998512777169999788998999999997257998