HHsearch alignment for GI: 254780217 and conserved domain: PRK11889

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=92.06  E-value=0.17  Score=31.78  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=62.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH-HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCH
Q ss_conf             81663117989888999999999981779988643121012678867-99996789875453001000101342123237
Q gi|254780217|r   34 HHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF-VKQMASHALHDFLYLSYSLNPKTGKWRTVITV  112 (347)
Q Consensus        34 ~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~-~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~v  112 (347)
T Consensus       241 ~q~IALVGPTGVGKTTTIAKLAArf~~~----~KkVALITtDTYRIGAVEQLKT--YAeIMgVPV---------~VV~dp  305 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGK----KKTVGFITTDHSRIGTVQQLQD--YVKTIGFEV---------IAVRDE  305 (436)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCC----CCEEEEEECCCCHHHHHHHHHH--HHHHHCCCE---------EEECCH
T ss_conf             7179998999988899999999998616----9808999806634769999999--999849943---------996888


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHCEEEEEEC
Q ss_conf             88755443102221111210353220554240--0014567776630-34341676504433573025203698864
Q gi|254780217|r  113 DEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR--NAANALLKSLEEP-PQKVLFILISHASPTILSTIRSRCLSIKF  186 (347)
Q Consensus       113 d~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~--~AaNALLK~LEEP-p~~t~fiLit~~~~~il~TI~SRc~~i~f  186 (347)
T Consensus       306 ~eL~~AL~~lk---dka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~l~i  379 (436)
T PRK11889        306 AAMTRALTYFK---EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHI  379 (436)
T ss_pred             HHHHHHHHHHH---HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf             99999999876---336888899929898846899999999998512777169999788998999999997257998