HHsearch alignment for GI: 254780217 and conserved domain: PRK12608
>PRK12608 transcription termination factor Rho; Provisional.
Probab=90.71 E-value=0.46 Score=28.24 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=29.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 631179898889999999999817799886431210126788679999678987545300100010
Q gi|254780217|r 37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK 102 (347)
Q Consensus 37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k 102 (347)
T Consensus 135 gLIVAPPkaGKT~LLq~IA~aI~---------------------------~NhPev~livLLIDER 173 (379)
T PRK12608 135 GLIVAPPRAGKTILLQQIAQAVA---------------------------ANHPDIHLMVLLIDER 173 (379)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH---------------------------HCCCCCEEEEEECCCC
T ss_conf 12745898657899999999998---------------------------5799848999981689