HHsearch alignment for GI: 254780217 and conserved domain: PRK12608

>PRK12608 transcription termination factor Rho; Provisional.
Probab=90.71  E-value=0.46  Score=28.24  Aligned_cols=39  Identities=18%  Similarity=0.119  Sum_probs=29.9

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf             631179898889999999999817799886431210126788679999678987545300100010
Q gi|254780217|r   37 LLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFLYLSYSLNPK  102 (347)
Q Consensus        37 ~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~~i~~~~~~k  102 (347)
T Consensus       135 gLIVAPPkaGKT~LLq~IA~aI~---------------------------~NhPev~livLLIDER  173 (379)
T PRK12608        135 GLIVAPPRAGKTILLQQIAQAVA---------------------------ANHPDIHLMVLLIDER  173 (379)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH---------------------------HCCCCCEEEEEECCCC
T ss_conf             12745898657899999999998---------------------------5799848999981689