HHsearch alignment for GI: 254780217 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.97  E-value=0.0099  Score=41.65  Aligned_cols=130  Identities=21%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             EEEECCCCCCCHHHHHHHHH-HHHHCCCCCCCCCHHHCCCCCCCHHH-HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf             66311798988899999999-99817799886431210126788679-99967898754530010001013421232378
Q gi|254780217|r   36 ALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFV-KQMASHALHDFLYLSYSLNPKTGKWRTVITVD  113 (347)
Q Consensus        36 a~Lf~Gp~GiGK~~~A~~~A-~~llc~~~~~~~~~~~~~~~~~~~~~-~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd  113 (347)
T Consensus       225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~k----kVaLIT~DTYRIgAvEQLkt--Ya~Il~iP------------v~vv~  286 (432)
T PRK12724        225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGK----SVSLYTTDNYRIAAIEQLKR--YADTMGMP------------FYPVK  286 (432)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCC----EEEEEECCCCCHHHHHHHHH--HHHHHCCC------------EEEEE
T ss_conf             99998999988899999999999997499----27999526653779999999--99985994------------59951


Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH-----HHHHHHHHH-HHCCCCCCEEEEECCCCCCCHHHHCEEEEEECC
Q ss_conf             87554431022211112103532205542400-----014567776-630343416765044335730252036988647
Q gi|254780217|r  114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN-----AANALLKSL-EEPPQKVLFILISHASPTILSTIRSRCLSIKFN  187 (347)
Q Consensus       114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-----AaNALLK~L-EEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~  187 (347)
T Consensus       287 ~~~el~~al~~----~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~  362 (432)
T PRK12724        287 DIKKFKETLAR----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR  362 (432)
T ss_pred             CHHHHHHHHHH----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf             89999999985----69999999299989789999999999998636678851799997889989999999984269998