HHsearch alignment for GI: 254780217 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.97 E-value=0.0099 Score=41.65 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=70.2
Q ss_pred EEEECCCCCCCHHHHHHHHH-HHHHCCCCCCCCCHHHCCCCCCCHHH-HHHHCCCCCCEEEECCCCHHHCCCCCCCCCHH
Q ss_conf 66311798988899999999-99817799886431210126788679-99967898754530010001013421232378
Q gi|254780217|r 36 ALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFV-KQMASHALHDFLYLSYSLNPKTGKWRTVITVD 113 (347)
Q Consensus 36 a~Lf~Gp~GiGK~~~A~~~A-~~llc~~~~~~~~~~~~~~~~~~~~~-~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd 113 (347)
T Consensus 225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~k----kVaLIT~DTYRIgAvEQLkt--Ya~Il~iP------------v~vv~ 286 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGK----SVSLYTTDNYRIAAIEQLKR--YADTMGMP------------FYPVK 286 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC----EEEEEECCCCCHHHHHHHHH--HHHHHCCC------------EEEEE
T ss_conf 99998999988899999999999997499----27999526653779999999--99985994------------59951
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH-----HHHHHHHHH-HHCCCCCCEEEEECCCCCCCHHHHCEEEEEECC
Q ss_conf 87554431022211112103532205542400-----014567776-630343416765044335730252036988647
Q gi|254780217|r 114 EIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN-----AANALLKSL-EEPPQKVLFILISHASPTILSTIRSRCLSIKFN 187 (347)
Q Consensus 114 ~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-----AaNALLK~L-EEPp~~t~fiLit~~~~~il~TI~SRc~~i~f~ 187 (347)
T Consensus 287 ~~~el~~al~~----~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~ 362 (432)
T PRK12724 287 DIKKFKETLAR----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR 362 (432)
T ss_pred CHHHHHHHHHH----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 89999999985----69999999299989789999999999998636678851799997889989999999984269998