HHsearch alignment for GI: 254780217 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=92.66  E-value=0.056  Score=35.56  Aligned_cols=150  Identities=16%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHCCCCC----------EEEEECCCCCCCHHHHHHHHH-HHHHCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf             299999999999828898----------166311798988899999999-998177998864312101267886799996
Q gi|254780217|r   17 HEDIEKFLSQYYCSGRMH----------HALLFEGEQGIGKATLGFRYA-GHVLQNPDFSKAPVRMCNPDPCSPFVKQMA   85 (347)
Q Consensus        17 ~~~~~~~L~~~~~~~~l~----------ha~Lf~Gp~GiGK~~~A~~~A-~~llc~~~~~~~~~~~~~~~~~~~~~~~i~   85 (347)
T Consensus       322 ~~~a~~~ll~~La~-~Lpv~~~d~~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~---~valit~Dty-----Ri-  391 (557)
T PRK12727        322 LHRGRGLMLGLLSK-RLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPR---DVALVTTDTQ-----RV-  391 (557)
T ss_pred             HHHHHHHHHHHHHH-HCCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC---EEEEEECCCC-----CH-
T ss_conf             88999999999996-28777775154076478743777673117999999999973998---1899972664-----08-


Q ss_pred             CCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH-HHHHHHHHHHH-CCCCCCE
Q ss_conf             789875453001000101342123237887554431022211112103532205542400-01456777663-0343416
Q gi|254780217|r   86 SHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRN-AANALLKSLEE-PPQKVLF  163 (347)
Q Consensus        86 ~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~-AaNALLK~LEE-Pp~~t~f  163 (347)
T Consensus       392 -ga~eQL~~y~~ilg---vpv~~~~~~~~l~~~l~~------l~~~~lvliDTaG~~~rd~~~~~~~~~l~~~~~~~~~L  461 (557)
T PRK12727        392 -GGREQLHSYGRQLG---IAVHEADSAESLLDLLER------LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLL  461 (557)
T ss_pred             -HHHHHHHHHHHHHC---CEEEEECCHHHHHHHHHH------HCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf             -79999999999839---757982899999999998------36999899949998846999999999875147763599


Q ss_pred             EEEECCCCCCCHHHHCEEEEEEC
Q ss_conf             76504433573025203698864
Q gi|254780217|r  164 ILISHASPTILSTIRSRCLSIKF  186 (347)
Q Consensus       164 iLit~~~~~il~TI~SRc~~i~f  186 (347)
T Consensus       462 vl~a~~~~~~l~~~~~~~~~~~~  484 (557)
T PRK12727        462 VLPANAHFSDLDEVVRRFAHAKP  484 (557)
T ss_pred             EEECCCCHHHHHHHHHHHCCCCC
T ss_conf             99688998999999998537998