HHsearch alignment for GI: 254780217 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.93 E-value=1.8e-24 Score=216.77 Aligned_cols=183 Identities=21% Similarity=0.275 Sum_probs=152.6
Q ss_pred CCCCCCCCCHHHHCCHHHHHH---HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 665555875656109299999---99999982889816631179898889999999999817799886431210126788
Q gi|254780217|r 2 IDRAFDPVYNQRLFGHEDIEK---FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS 78 (347)
Q Consensus 2 ~~~~~~p~~~~~i~G~~~~~~---~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~ 78 (347)
T Consensus 18 LA~rmRP~~Lde~vGQ~hllg~g~~Lrr~i~~~~~~S-~Il~GPPGtGKTTLA~iIA~~t~~------------------ 78 (726)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGS-LILYGPPGVGKTTLARIIANHTRA------------------ 78 (726)
T ss_pred CHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC------------------
T ss_conf 5686299987773595754289828999997699982-788897999999999999887488------------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 67999967898754530010001013421232378875544310222-11112103532205542400014567776630
Q gi|254780217|r 79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEEP 157 (347)
Q Consensus 79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~-~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP 157 (347)
T Consensus 79 ------------~F~~lsA----------v~sgvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~- 135 (726)
T PRK13341 79 ------------HFSSLNA----------VLAGVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN- 135 (726)
T ss_pred ------------CEEEEEC----------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCC-
T ss_conf ------------6799856----------20377999999999999987459965999862542588789987888606-
Q ss_pred CCCCCEEEE---ECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHHHHH-----------CCCCCHHHHHHHHHHCCCCHH
Q ss_conf 343416765---04433-573025203698864799989999999972-----------788896789999997598978
Q gi|254780217|r 158 PQKVLFILI---SHASP-TILSTIRSRCLSIKFNSLSENNLYKALEQL-----------KIMGWDSKRDFVKIAAYGSVA 222 (347)
Q Consensus 158 p~~t~fiLi---t~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L~~~-----------~~~~~~~~~~~~~~~s~Gs~~ 222 (347)
T Consensus 136 ---G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR 212 (726)
T PRK13341 136 ---GTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDAR 212 (726)
T ss_pred ---CEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf ---83899970478974364298883234667438999999999999987674325667877598999999997597399
Q ss_pred HHHHHHC
Q ss_conf 9998814
Q gi|254780217|r 223 RAIKILH 229 (347)
Q Consensus 223 ~A~~ll~ 229 (347)
T Consensus 213 ~aLN~LE 219 (726)
T PRK13341 213 SLLNALE 219 (726)
T ss_pred HHHHHHH
T ss_conf 9999999