HHsearch alignment for GI: 254780217 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.93  E-value=1.8e-24  Score=216.77  Aligned_cols=183  Identities=21%  Similarity=0.275  Sum_probs=152.6

Q ss_pred             CCCCCCCCCHHHHCCHHHHHH---HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf             665555875656109299999---99999982889816631179898889999999999817799886431210126788
Q gi|254780217|r    2 IDRAFDPVYNQRLFGHEDIEK---FLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCS   78 (347)
Q Consensus         2 ~~~~~~p~~~~~i~G~~~~~~---~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~   78 (347)
T Consensus        18 LA~rmRP~~Lde~vGQ~hllg~g~~Lrr~i~~~~~~S-~Il~GPPGtGKTTLA~iIA~~t~~------------------   78 (726)
T PRK13341         18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGS-LILYGPPGVGKTTLARIIANHTRA------------------   78 (726)
T ss_pred             CHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC------------------
T ss_conf             5686299987773595754289828999997699982-788897999999999999887488------------------


Q ss_pred             HHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf             67999967898754530010001013421232378875544310222-11112103532205542400014567776630
Q gi|254780217|r   79 PFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLT-ANTGYWRVIMIDPVDGMNRNAANALLKSLEEP  157 (347)
Q Consensus        79 ~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~-~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEP  157 (347)
T Consensus        79 ------------~F~~lsA----------v~sgvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~-  135 (726)
T PRK13341         79 ------------HFSSLNA----------VLAGVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN-  135 (726)
T ss_pred             ------------CEEEEEC----------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCC-
T ss_conf             ------------6799856----------20377999999999999987459965999862542588789987888606-


Q ss_pred             CCCCCEEEE---ECCCC-CCCHHHHCEEEEEECCCCCHHHHHHHHHHH-----------CCCCCHHHHHHHHHHCCCCHH
Q ss_conf             343416765---04433-573025203698864799989999999972-----------788896789999997598978
Q gi|254780217|r  158 PQKVLFILI---SHASP-TILSTIRSRCLSIKFNSLSENNLYKALEQL-----------KIMGWDSKRDFVKIAAYGSVA  222 (347)
Q Consensus       158 p~~t~fiLi---t~~~~-~il~TI~SRc~~i~f~~l~~~~~~~~L~~~-----------~~~~~~~~~~~~~~~s~Gs~~  222 (347)
T Consensus       136 ---G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR  212 (726)
T PRK13341        136 ---GTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDAR  212 (726)
T ss_pred             ---CEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf             ---83899970478974364298883234667438999999999999987674325667877598999999997597399


Q ss_pred             HHHHHHC
Q ss_conf             9998814
Q gi|254780217|r  223 RAIKILH  229 (347)
Q Consensus       223 ~A~~ll~  229 (347)
T Consensus       213 ~aLN~LE  219 (726)
T PRK13341        213 SLLNALE  219 (726)
T ss_pred             HHHHHHH
T ss_conf             9999999