HHsearch alignment for GI: 254780217 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=92.29 E-value=0.28 Score=29.97 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999828898166311798988899999999998
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
T Consensus 149 ~~~~~fL~~aV~~r~---NIlIsGgTGSGKTTllnALl~~I 186 (343)
T PRK13851 149 GDLEAFLHACVVGRL---TMLLCGPTGSGKTTMSKTLISAI 186 (343)
T ss_pred HHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHCC
T ss_conf 779999999997698---89998889861999999999628