HHsearch alignment for GI: 254780217 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=93.89 E-value=0.12 Score=32.90 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 09299999999999828898166311798988899999999998
Q gi|254780217|r 15 FGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV 58 (347)
Q Consensus 15 ~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l 58 (347)
T Consensus 144 ~~~~~~~~fL~~aV~~r~---NilI~G~TgSGKTTll~aL~~~i 184 (332)
T PRK13900 144 LAEKKIKEFLEHAVISKK---NIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHCC
T ss_conf 410579999999986487---19998888988999999998358