>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.

Probab=97.48 E-value=0.0028 Score=46.06 Aligned_cols=182 Identities=18% Similarity=0.124 Sum_probs=110.4 Q ss_pred CCHHHHCCHHHHHHHHHHHHHC------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC Q ss_conf 7565610929999999999982------------8898166311798988899999999998177998864312101267 Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCS------------GRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347) Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~------------~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347) T Consensus 538 v~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anfi------------- 604 (980) T TIGR01243 538 VKWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI------------- 604 (980) T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEE------------- T ss_conf 1100146678999999877523444058998607889973487468986168888877401456467------------- Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC------------- Q ss_conf 8867999967898754530010001013421232378875544310222111121035322055424------------- Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMN------------- 143 (347) Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln------------- 143 (347) T Consensus 605 ---------~v~GPe~l---skWvGe--------se~~ir~if~~ar----q~aP~~~f~deidaiaP~rG~~~~~~~vt 660 (980) T TIGR01243 605 ---------AVRGPEIL---SKWVGE--------SEKAIREIFRKAR----QAAPAIIFFDEIDAIAPARGASLDEKGVT 660 (980) T ss_pred ---------EECCCHHH---HHHHCH--------HHHHHHHHHHHHH----HCCCEEEEEECHHHHCCCCCCCCCCCCHH T ss_conf ---------74073122---344032--------4799999999864----12873787302111054124421001026 Q ss_pred HHHHHHHHHHHH--HCCCCCCEEEEECCCCCCCHHHHC--EEEE-EECCCCCHHHHHHHHHH---HCCCCCHHHHHHHHH Q ss_conf 000145677766--303434167650443357302520--3698-86479998999999997---278889678999999 Q gi|254780217|r 144 RNAANALLKSLE--EPPQKVLFILISHASPTILSTIRS--RCLS-IKFNSLSENNLYKALEQ---LKIMGWDSKRDFVKI 215 (347) Q Consensus 144 ~~AaNALLK~LE--EPp~~t~fiLit~~~~~il~TI~S--Rc~~-i~f~~l~~~~~~~~L~~---~~~~~~~~~~~~~~~ 215 (347) T Consensus 661 d~~~nqll~e~dG~~~~~~vvvi~atnrPdi~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~~~~l~~dv~l~~la~ 740 (980) T TIGR01243 661 DRIVNQLLTELDGLEELSDVVVIAATNRPDILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTRSMPLAEDVDLEELAK 740 (980) T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH T ss_conf 89999999864044343665898615887423610048874121686059855676767655311135301343899986 Q ss_pred HCCCCHHHHHHH Q ss_conf 759897899988 Q gi|254780217|r 216 AAYGSVARAIKI 227 (347) Q Consensus 216 ~s~Gs~~~A~~l 227 (347) T Consensus 741 ~teGytGadi~a 752 (980) T TIGR01243 741 KTEGYTGADIEA 752 (980) T ss_pred HHCCCCCHHHHH T ss_conf 516876322999

HHsearch alignment for GI: 254780217 and conserved domain: TIGR01243