HHsearch alignment for GI: 254780217 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.49 E-value=0.11 Score=33.30 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=88.2
Q ss_pred CCHHHHCCHHHHHHHHHHHHHCC------------CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
Q ss_conf 75656109299999999999828------------898166311798988899999999998177998864312101267
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYCSG------------RMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDP 76 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~~~------------~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~ 76 (347)
T Consensus 203 vtyediG~l~e~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeim----- 277 (980)
T TIGR01243 203 VTYEDIGGLKEAVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIM----- 277 (980)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHH-----
T ss_conf 203320335899999999884357564789861889987358755898617899999875305517885060344-----
Q ss_pred CCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-----------H
Q ss_conf 88679999678987545300100010134212323788755443102221111210353220554240-----------0
Q gi|254780217|r 77 CSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR-----------N 145 (347)
Q Consensus 77 ~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~-----------~ 145 (347)
T Consensus 278 -----sky~Ge-----------------------~e~~lr~if~ea----eenaP~iifideidaiaPkr~e~~Geve~r 325 (980)
T TIGR01243 278 -----SKYYGE-----------------------SEERLREIFKEA----EENAPSIIFIDEIDAIAPKREEVTGEVEKR 325 (980)
T ss_pred -----HHHCCC-----------------------CHHHHHHHHHHH----HHCCCCEEEEECHHHCCCCCCCHHHHHHHH
T ss_conf -----331363-----------------------078999999865----305870787412110076410000168899
Q ss_pred HHHHHHHHHHHCCC--CCCEEEEECCCCCCCHHHHCEE---EEEECCCCCHHHHHHHHHHH
Q ss_conf 01456777663034--3416765044335730252036---98864799989999999972
Q gi|254780217|r 146 AANALLKSLEEPPQ--KVLFILISHASPTILSTIRSRC---LSIKFNSLSENNLYKALEQL 201 (347)
Q Consensus 146 AaNALLK~LEEPp~--~t~fiLit~~~~~il~TI~SRc---~~i~f~~l~~~~~~~~L~~~ 201 (347)
T Consensus 326 ~v~qlltlmdGlk~rG~v~viGatnrP~a~dPalrrPGrfdrei~~~~Pd~~~r~eil~~h 386 (980)
T TIGR01243 326 VVAQLLTLMDGLKGRGKVIVIGATNRPDALDPALRRPGRFDREIEIGVPDKEGRKEILQIH 386 (980)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 9999999974002487289981468850026224278864433574188545678888764