HHsearch alignment for GI: 254780217 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.65 E-value=0.0035 Score=45.28 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC-HHHCCCCCCCHHHHHHH---CCCCCC
Q ss_conf 92999999999998288981663117989888999999999981779988643-12101267886799996---789875
Q gi|254780217|r 16 GHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAP-VRMCNPDPCSPFVKQMA---SHALHD 91 (347)
Q Consensus 16 G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~-~~~~~~~~~~~~~~~i~---~~~hpd 91 (347)
T Consensus 228 ~~D~Q~~a~~~aL~~-~f---~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~ 303 (753)
T TIGR01447 228 VTDWQKVAVALALKS-NF---SLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKK 303 (753)
T ss_pred HHHHHHHHHHHHHHC-CE---EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 137999999998608-76---89987988977899999999999989864997404788668447999999999988632
Q ss_pred EEEECCCCHHHCCCCCCCCCHHHHHHHHH-HC-CCCCCCC------CCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC-
Q ss_conf 45300100010134212323788755443-10-2221111------210353220554240001456777663034341-
Q gi|254780217|r 92 FLYLSYSLNPKTGKWRTVITVDEIRRIRY-FL-SLTANTG------YWRVIMIDPVDGMNRNAANALLKSLEEPPQKVL- 162 (347)
Q Consensus 92 ~~~i~~~~~~k~~~~~~~I~vd~IR~l~~-~~-~~~~~~~------~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~t~- 162 (347)
T Consensus 304 L~~~~~aid~~~-~~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSMVdl~l---m~kL~~A~~~~~k~ 379 (753)
T TIGR01447 304 LAAENMAIDEDL-IAALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASMVDLPL---MAKLLKALPPNTKD 379 (753)
T ss_pred HHHHCCCCCHHH-HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCHHH---HHHHHHHCCCCCCC
T ss_conf 234236658798-54872045688886166147876776777788985527870600226799---99999722630013
Q ss_pred -------EEEEE
Q ss_conf -------67650
Q gi|254780217|r 163 -------FILIS 167 (347)
Q Consensus 163 -------fiLit 167 (347)
T Consensus 380 ~KLy~~~LIllG 391 (753)
T TIGR01447 380 KKLYADRLILLG 391 (753)
T ss_pred CCHHHCCCCEEC
T ss_conf 201010200122