HHsearch alignment for GI: 254780217 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=92.92 E-value=0.096 Score=33.69 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC---CCHHHCCCC--------------------
Q ss_conf 999999999982889816631179898889999999999817799886---431210126--------------------
Q gi|254780217|r 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSK---APVRMCNPD-------------------- 75 (347)
Q Consensus 19 ~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~---~~~~~~~~~-------------------- 75 (347)
T Consensus 344 ~~l~gi~F~~~aG---e~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQdvELF~GTv 420 (556)
T TIGR01842 344 PTLRGISFAIQAG---EALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLKQWDRETLGKHIGYLPQDVELFSGTV 420 (556)
T ss_pred HHHCCCCEEECCC---CEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 4227862156377---4588874786525889878872101356533640334402375365880154798505076767
Q ss_pred ------------CCCHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHH-H
Q ss_conf ------------7886799996789875453001000101342123237887554431022-2111121035322055-4
Q gi|254780217|r 76 ------------PCSPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSL-TANTGYWRVIMIDPVD-G 141 (347)
Q Consensus 76 ------------~~~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~-~~~~~~~Ki~IId~ad-~ 141 (347)
T Consensus 421 a~NIARF~en~d~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQ----RQRIaLARAlyG~P~lvvLDEPNsN 496 (556)
T TIGR01842 421 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQ----RQRIALARALYGDPKLVVLDEPNSN 496 (556)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 640244688788789999997603035751696885443137777786146----8999999987179837873288987
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCEEEEECCCC
Q ss_conf 24000145677766303-4341676504433
Q gi|254780217|r 142 MNRNAANALLKSLEEPP-QKVLFILISHASP 171 (347)
Q Consensus 142 ln~~AaNALLK~LEEPp-~~t~fiLit~~~~ 171 (347)
T Consensus 497 LD~~GE~AL~~Ai~~lK~rg~tvv~itHRp~ 527 (556)
T TIGR01842 497 LDEEGEQALANAIKALKARGITVVVITHRPS 527 (556)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 6617899999999999867972899841068