HHsearch alignment for GI: 254780217 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=100.00 E-value=0 Score=537.61 Aligned_cols=252 Identities=27% Similarity=0.448 Sum_probs=221.6
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH
Q ss_conf 96655558756561092999999999998288981663117989888999999999981779988643121012678867
Q gi|254780217|r 1 MIDRAFDPVYNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPF 80 (347)
Q Consensus 1 ~~~~~~~p~~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~ 80 (347)
T Consensus 3 ~laRKyRP~~F~d~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~------ 75 (363)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECES------ 75 (363)
T ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCH------
T ss_conf 6122237886110235179999999999718966234502859976355899999986588-787787777502------
Q ss_pred HHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99996789875453001000101342123237887554431022211112103532205542400014567776630343
Q gi|254780217|r 81 VKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPPQK 160 (347)
Q Consensus 81 ~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp~~ 160 (347)
T Consensus 76 C~~i~~g~~~DviEiDAASN~---------gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~h 146 (363)
T TIGR02397 76 CKEINSGSSLDVIEIDAASNN---------GVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 146 (363)
T ss_pred HHHHHCCCCCCEEEECCCCCC---------CHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 277652898666886486568---------78899999873036875544335887323028656899987652279876
Q ss_pred CCEEEEECCCCCCCHHHHCEEEEEECCCCCHHHHHHHH----HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCC-----C
Q ss_conf 41676504433573025203698864799989999999----97278889678999999759897899988145-----7
Q gi|254780217|r 161 VLFILISHASPTILSTIRSRCLSIKFNSLSENNLYKAL----EQLKIMGWDSKRDFVKIAAYGSVARAIKILHY-----D 231 (347)
Q Consensus 161 t~fiLit~~~~~il~TI~SRc~~i~f~~l~~~~~~~~L----~~~~~~~~~~~~~~~~~~s~Gs~~~A~~ll~~-----~ 231 (347)
T Consensus 147 V~FIlATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~ 226 (363)
T TIGR02397 147 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGN 226 (363)
T ss_pred EEEEEECCCHHHCCCCCEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf 28887348711205540210003126789989999999999987088317789999999628961068899999998268
Q ss_pred H---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-CCHHHHHH
Q ss_conf 7---99999999984032343228999999999831-67699999
Q gi|254780217|r 232 C---DKIISSYIDLIHIPRQEYALQKMQQIADELLS-QDQKIAFD 272 (347)
Q Consensus 232 ~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 272 (347)
T Consensus 227 ~~DG~i~~~~v~~~lGl~~----~~~l~~l~~~~~~~~d~~~~l~ 267 (363)
T TIGR02397 227 GSDGKITYEDVNEMLGLVD----EEKLIELLEAILNKRDTEEALK 267 (363)
T ss_pred CCCCCCCHHHHHHHHCCCC----HHHHHHHHHHHHCCCCHHHHHH
T ss_conf 8788657899999835777----8999999999753876889999