HHsearch alignment for GI: 254780217 and conserved domain: TIGR02533
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=93.55 E-value=0.17 Score=31.78 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH---------HCCCCCCCHHHHHHHCC
Q ss_conf 9999999999982889816631-1798988899999999998177998864312---------10126788679999678
Q gi|254780217|r 18 EDIEKFLSQYYCSGRMHHALLF-EGEQGIGKATLGFRYAGHVLQNPDFSKAPVR---------MCNPDPCSPFVKQMASH 87 (347)
Q Consensus 18 ~~~~~~L~~~~~~~~l~ha~Lf-~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~---------~~~~~~~~~~~~~i~~~ 87 (347)
T Consensus 231 ~~~l~~~~~li~---rpHGIiLVTGPTGSGKtTTLYaaL~~LN~~-~~NIlTvEDPVEY~i~GIgQ~Qvn~kIglTFA~G 306 (495)
T TIGR02533 231 PELLSSLERLIK---RPHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAG 306 (495)
T ss_pred HHHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECCEEEEECCCCEEEECCCCCHHHHHH
T ss_conf 889999999971---889618841778985258899999863589-9715686578247624876365146543038888
Q ss_pred ------CCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHH-H-CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH---H
Q ss_conf ------987545300100010134212323788755443-1-0222111121035322055424000145677766---3
Q gi|254780217|r 88 ------ALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRY-F-LSLTANTGYWRVIMIDPVDGMNRNAANALLKSLE---E 156 (347)
Q Consensus 88 ------~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~-~-~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LE---E 156 (347)
T Consensus 307 LRaILRQDPD-----------------iiMvGEIRD~ETA~IAiQASLTGH---LVLSTLH--TNDAAgAvtRL~DMGvE 364 (495)
T TIGR02533 307 LRAILRQDPD-----------------IIMVGEIRDLETAQIAIQASLTGH---LVLSTLH--TNDAAGAVTRLIDMGVE 364 (495)
T ss_pred HHHHHCCCCC-----------------EEEEECCCCHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHCCCC
T ss_conf 7886427998-----------------899823160689999998764325---7655655--40154466555325864
Q ss_pred CCCCCCEEEEECCCCCCCH-----HHHCEEEEE
Q ss_conf 0343416765044335730-----252036988
Q gi|254780217|r 157 PPQKVLFILISHASPTILS-----TIRSRCLSI 184 (347)
Q Consensus 157 Pp~~t~fiLit~~~~~il~-----TI~SRc~~i 184 (347)
T Consensus 365 P------FL~aSsl~GVLAQRLVRrlCp~Cke~ 391 (495)
T TIGR02533 365 P------FLLASSLLGVLAQRLVRRLCPHCKEP 391 (495)
T ss_pred H------HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 0------48999999999863343315146888