HHsearch alignment for GI: 254780217 and conserved domain: TIGR02640
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=96.72 E-value=0.002 Score=47.27 Aligned_cols=115 Identities=23% Similarity=0.326 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE
Q ss_conf 9999999999828898166311798988899999999998-----17799886431210126788679999678987545
Q gi|254780217|r 19 DIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHV-----LQNPDFSKAPVRMCNPDPCSPFVKQMASHALHDFL 93 (347)
Q Consensus 19 ~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~l-----lc~~~~~~~~~~~~~~~~~~~~~~~i~~~~hpd~~ 93 (347)
T Consensus 9 ~v~~R~l~yL~~G~PvH---l~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLv--------------G~~~g~~ 71 (265)
T TIGR02640 9 RVTSRALRYLKSGYPVH---LRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLV--------------GSYAGYT 71 (265)
T ss_pred HHHHHHHHHHCCCCCEE---EECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC--------------CCCCCCE
T ss_conf 99998766322788667---447888556899999997368968998658232654423--------------1546752
Q ss_pred EECCCCHHHCCCCCCCCCHH-HHH--HHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 30010001013421232378-875--5443102221111210353220554240001456777663
Q gi|254780217|r 94 YLSYSLNPKTGKWRTVITVD-EIR--RIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEE 156 (347)
Q Consensus 94 ~i~~~~~~k~~~~~~~I~vd-~IR--~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEE 156 (347)
T Consensus 72 ~~k-v~D---qfihnV~K~~d~~~~~W~D~rLt~Av~eG~--TLVYdEF~RskP~~nNVLLSvlEE 131 (265)
T TIGR02640 72 RKK-VVD---QFIHNVVKLEDIVRQNWVDNRLTLAVREGF--TLVYDEFTRSKPETNNVLLSVLEE 131 (265)
T ss_pred EEE-EEE---CCEEEEECCCCCCCCCCCCCHHHHHHHCCC--EEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 222-320---121113425122002667835789975697--276647578862045656755552